Literature DB >> 19879387

Defining the conserved internal architecture of a protein kinase.

Alexandr P Kornev1, Susan S Taylor.   

Abstract

Protein kinases constitute a large protein family of important regulators in all eukaryotic cells. All of the protein kinases have a similar bilobal fold, and their key structural features have been well studied. However, the recent discovery of non-contiguous hydrophobic ensembles inside the protein kinase core shed new light on the internal organization of these molecules. Two hydrophobic "spines" traverse both lobes of the protein kinase molecule, providing a firm but flexible connection between its key elements. The spine model introduces a useful framework for analysis of intramolecular communications, molecular dynamics, and drug design. Published by Elsevier B.V.

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Year:  2009        PMID: 19879387      PMCID: PMC3435107          DOI: 10.1016/j.bbapap.2009.10.017

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  20 in total

Review 1.  Structural basis for control by phosphorylation.

Authors:  L N Johnson; R J Lewis
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

2.  Evolutionarily conserved networks of residues mediate allosteric communication in proteins.

Authors:  Gürol M Süel; Steve W Lockless; Mark A Wall; Rama Ranganathan
Journal:  Nat Struct Biol       Date:  2003-01

Review 3.  Activation loop phosphorylation and catalysis in protein kinases: is there functional evidence for the autoinhibitor model?

Authors:  Joseph A Adams
Journal:  Biochemistry       Date:  2003-01-28       Impact factor: 3.162

Review 4.  Regulation of protein kinases; controlling activity through activation segment conformation.

Authors:  Brad Nolen; Susan Taylor; Gourisankar Ghosh
Journal:  Mol Cell       Date:  2004-09-10       Impact factor: 17.970

5.  Comparative surface geometry of the protein kinase family.

Authors:  Elaine E Thompson; Alexandr P Kornev; Natarajan Kannan; Choel Kim; Lynn F Ten Eyck; Susan S Taylor
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

6.  A single pair of acidic residues in the kinase major groove mediates strong substrate preference for P-2 or P-5 arginine in the AGC, CAMK, and STE kinase families.

Authors:  Guozhi Zhu; Koichi Fujii; Yin Liu; Vlad Codrea; Juan Herrero; Stephen Shaw
Journal:  J Biol Chem       Date:  2005-08-30       Impact factor: 5.157

7.  Dissection of the nucleotide and metal-phosphate binding sites in cAMP-dependent protein kinase.

Authors:  F W Herberg; M L Doyle; S Cox; S S Taylor
Journal:  Biochemistry       Date:  1999-05-11       Impact factor: 3.162

8.  A molecular gate which controls unnatural ATP analogue recognition by the tyrosine kinase v-Src.

Authors:  Y Liu; K Shah; F Yang; L Witucki; K M Shokat
Journal:  Bioorg Med Chem       Date:  1998-08       Impact factor: 3.641

9.  Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase.

Authors:  D R Knighton; J H Zheng; L F Ten Eyck; V A Ashford; N H Xuong; S S Taylor; J M Sowadski
Journal:  Science       Date:  1991-07-26       Impact factor: 47.728

Review 10.  Evolution of protein kinase signaling from yeast to man.

Authors:  Gerard Manning; Gregory D Plowman; Tony Hunter; Sucha Sudarsanam
Journal:  Trends Biochem Sci       Date:  2002-10       Impact factor: 13.807

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  98 in total

1.  Expression and purification of Src-family kinases for solution NMR studies.

Authors:  Andrea Piserchio; David Cowburn; Ranajeet Ghose
Journal:  Methods Mol Biol       Date:  2012

Review 2.  Solution NMR Spectroscopy for the Study of Enzyme Allostery.

Authors:  George P Lisi; J Patrick Loria
Journal:  Chem Rev       Date:  2016-01-06       Impact factor: 60.622

3.  An Isoform-Specific Myristylation Switch Targets Type II PKA Holoenzymes to Membranes.

Authors:  Ping Zhang; Feng Ye; Adam C Bastidas; Alexandr P Kornev; Jian Wu; Mark H Ginsberg; Susan S Taylor
Journal:  Structure       Date:  2015-08-13       Impact factor: 5.006

4.  Dynamics connect substrate recognition to catalysis in protein kinase A.

Authors:  Larry R Masterson; Cecilia Cheng; Tao Yu; Marco Tonelli; Alexandr Kornev; Susan S Taylor; Gianluigi Veglia
Journal:  Nat Chem Biol       Date:  2010-10-03       Impact factor: 15.040

5.  Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy.

Authors:  Larry R Masterson; Lei Shi; Emily Metcalfe; Jiali Gao; Susan S Taylor; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-06       Impact factor: 11.205

6.  Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes.

Authors:  Joseph Fasolo; Andrea Sboner; Mark G F Sun; Haiyuan Yu; Rui Chen; Donald Sharon; Philip M Kim; Mark Gerstein; Michael Snyder
Journal:  Genes Dev       Date:  2011-04-01       Impact factor: 11.361

Review 7.  Eukaryote-like serine/threonine kinases and phosphatases in bacteria.

Authors:  Sandro F F Pereira; Lindsie Goss; Jonathan Dworkin
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

8.  Mutation of a kinase allosteric node uncouples dynamics linked to phosphotransfer.

Authors:  Lalima G Ahuja; Alexandr P Kornev; Christopher L McClendon; Gianluigi Veglia; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

9.  Reevaluation of the Role of Extracellular Signal-Regulated Kinase 3 in Perinatal Survival and Postnatal Growth Using New Genetically Engineered Mouse Models.

Authors:  Mathilde Soulez; Marc K Saba-El-Leil; Benjamin Turgeon; Simon Mathien; Philippe Coulombe; Sonia Klinger; Justine Rousseau; Kim Lévesque; Sylvain Meloche
Journal:  Mol Cell Biol       Date:  2019-03-01       Impact factor: 4.272

10.  The ins and outs of bcr-abl inhibition.

Authors:  E Premkumar Reddy; Aneel K Aggarwal
Journal:  Genes Cancer       Date:  2012-05
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