Literature DB >> 21471451

Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy.

Larry R Masterson1, Lei Shi, Emily Metcalfe, Jiali Gao, Susan S Taylor, Gianluigi Veglia.   

Abstract

Protein kinase A (PKA) is a ubiquitous phosphoryl transferase that mediates hundreds of cell signaling events. During turnover, its catalytic subunit (PKA-C) interconverts between three major conformational states (open, intermediate, and closed) that are dynamically and allosterically activated by nucleotide binding. We show that the structural transitions between these conformational states are minimal and allosteric dynamics encode the motions from one state to the next. NMR and molecular dynamics simulations define the energy landscape of PKA-C, with the substrate allowing the enzyme to adopt a broad distribution of conformations (dynamically committed state) and the inhibitors (high magnesium and pseudosubstrate) locking it into discrete minima (dynamically quenched state), thereby reducing the motions that allow turnover. These results unveil the role of internal dynamics in both kinase function and regulation.

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Year:  2011        PMID: 21471451      PMCID: PMC3084134          DOI: 10.1073/pnas.1102701108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  70 in total

Review 1.  Mysteries of magnesium homeostasis.

Authors:  E Murphy
Journal:  Circ Res       Date:  2000-02-18       Impact factor: 17.367

2.  Dynamics connect substrate recognition to catalysis in protein kinase A.

Authors:  Larry R Masterson; Cecilia Cheng; Tao Yu; Marco Tonelli; Alexandr Kornev; Susan S Taylor; Gianluigi Veglia
Journal:  Nat Chem Biol       Date:  2010-10-03       Impact factor: 15.040

Review 3.  Relating protein motion to catalysis.

Authors:  Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

4.  Allosteric suppression of HIV-1 reverse transcriptase structural dynamics upon inhibitor binding.

Authors:  James M Seckler; Mary D Barkley; Patrick L Wintrode
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Nanometer propagation of millisecond motions in V-type allostery.

Authors:  James M Lipchock; J Patrick Loria
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

6.  Relationship between total and free cellular Mg(2+) during metabolic stimulation of rat cardiac myocytes and perfused hearts.

Authors:  M Fatholahi; K LaNoue; A Romani; A Scarpa
Journal:  Arch Biochem Biophys       Date:  2000-02-15       Impact factor: 4.013

Review 7.  Enzyme dynamics point to stepwise conformational selection in catalysis.

Authors:  Buyong Ma; Ruth Nussinov
Journal:  Curr Opin Chem Biol       Date:  2010-09-06       Impact factor: 8.822

8.  Nuclear magnetic resonance study of the role of M42 in the solution dynamics of Escherichia coli dihydrofolate reductase.

Authors:  Randall V Mauldin; Andrew L Lee
Journal:  Biochemistry       Date:  2010-03-02       Impact factor: 3.162

Review 9.  Protein dynamics and conformational disorder in molecular recognition.

Authors:  Tanja Mittag; Lewis E Kay; Julie D Forman-Kay
Journal:  J Mol Recognit       Date:  2010 Mar-Apr       Impact factor: 2.137

10.  Dynamically driven protein allostery.

Authors:  Nataliya Popovych; Shangjin Sun; Richard H Ebright; Charalampos G Kalodimos
Journal:  Nat Struct Mol Biol       Date:  2006-08-13       Impact factor: 15.369

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  76 in total

1.  Intrinsic disorder modulates protein self-assembly and aggregation.

Authors:  Alfonso De Simone; Craig Kitchen; Ann H Kwan; Margaret Sunde; Christopher M Dobson; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

2.  Heteronuclear Adiabatic Relaxation Dispersion (HARD) for quantitative analysis of conformational dynamics in proteins.

Authors:  Nathaniel J Traaseth; Fa-An Chao; Larry R Masterson; Silvia Mangia; Michael Garwood; Shalom Michaeli; Burckhard Seelig; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2012-04-06       Impact factor: 2.229

3.  Dynamic architecture of a protein kinase.

Authors:  Christopher L McClendon; Alexandr P Kornev; Michael K Gilson; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-15       Impact factor: 11.205

4.  Protein structural ensembles are revealed by redefining X-ray electron density noise.

Authors:  P Therese Lang; James M Holton; James S Fraser; Tom Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-20       Impact factor: 11.205

5.  Peptide modulation of class I major histocompatibility complex protein molecular flexibility and the implications for immune recognition.

Authors:  William F Hawse; Brian E Gloor; Cory M Ayres; Kevin Kho; Elizabeth Nuter; Brian M Baker
Journal:  J Biol Chem       Date:  2013-07-08       Impact factor: 5.157

6.  An intrinsically disordered photosystem II subunit, PsbO, provides a structural template and a sensor of the hydrogen-bonding network in photosynthetic water oxidation.

Authors:  Adam R Offenbacher; Brandon C Polander; Bridgette A Barry
Journal:  J Biol Chem       Date:  2013-08-12       Impact factor: 5.157

7.  Phosphoryl Transfer Reaction Snapshots in Crystals: INSIGHTS INTO THE MECHANISM OF PROTEIN KINASE A CATALYTIC SUBUNIT.

Authors:  Oksana Gerlits; Jianhui Tian; Amit Das; Paul Langan; William T Heller; Andrey Kovalevsky
Journal:  J Biol Chem       Date:  2015-04-28       Impact factor: 5.157

Review 8.  Evolution of a dynamic molecular switch.

Authors:  Susan S Taylor; Hiruy S Meharena; Alexandr P Kornev
Journal:  IUBMB Life       Date:  2019-05-06       Impact factor: 3.885

Review 9.  Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.

Authors:  George P Lisi; J Patrick Loria
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-12-07       Impact factor: 9.795

10.  Protein kinase A in the neutron beam: Insights for catalysis from directly observing protons.

Authors:  Oksana Gerlits; Kevin L Weiss; Matthew P Blakeley; Gianluigi Veglia; Susan S Taylor; Andrey Kovalevsky
Journal:  Methods Enzymol       Date:  2020-01-17       Impact factor: 1.600

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