Literature DB >> 19855999

A trial of minimization of chromosome 7 in Aspergillus oryzae by multiple chromosomal deletions.

Feng Jie Jin1, Tadashi Takahashi, Michiyo Utsushikawa, Toshi Furukido, Michiyo Nishida, Masahiro Ogawa, Masahumi Tokuoka, Yasuji Koyama.   

Abstract

We aim to create an Aspergillus oryzae mutant with a highly reduced chromosome, but better growth, by eliminating the nonessential regions coding various dispensable functions for its better industrial use. In our previous study, we successfully determined the outline of essential and nonessential regions by constructing a series of large chromosomal deletions in A. oryzae chromosome 7. Based on these results, we here constructed two mutants, designated RkuAF7A and RkuAF7B, lacking 24.7 and 24% (725 and 705 kb) of wild type chromosome 7, respectively, using multiple large-scale chromosomal deletions in a recursive pyrG-mediated transformation system. Both showed higher amylase activity in DPY liquid medium and faster growth rate on malt agar medium relative to the parent strain. The two mutants also displayed soft fluffy hyphal morphology when grown in DPY liquid media. In addition, the gene expression profile obtained by DNA microarray indicated that although the deletion regions were fewer than 2% of the whole genome, the effect on whole gene expression exceeded 20%. Among these, the genes involved in secondary metabolism showed a relatively large change in their gene expression levels. Together, the constructed mutants showing better growth and potential usefulness is possibly suitable for further industrial use.

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Year:  2009        PMID: 19855999     DOI: 10.1007/s00438-009-0494-y

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  40 in total

1.  A gene expression map for Caenorhabditis elegans.

Authors:  S K Kim; J Lund; M Kiraly; K Duke; M Jiang; J M Stuart; A Eizinger; B N Wylie; G S Davidson
Journal:  Science       Date:  2001-09-14       Impact factor: 47.728

2.  Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis.

Authors:  Igor Y Goryshin; Todd A Naumann; Jennifer Apodaca; William S Reznikoff
Journal:  Genome Res       Date:  2003-03-12       Impact factor: 9.043

3.  Global transposon mutagenesis and a minimal Mycoplasma genome.

Authors:  C A Hutchison; S N Peterson; S R Gill; R T Cline; O White; C M Fraser; H O Smith; J C Venter
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

4.  A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors.

Authors:  Hildur V Colot; Gyungsoon Park; Gloria E Turner; Carol Ringelberg; Christopher M Crew; Liubov Litvinkova; Richard L Weiss; Katherine A Borkovich; Jay C Dunlap
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-26       Impact factor: 11.205

5.  Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data.

Authors:  Austen R D Ganley; Takehiko Kobayashi
Journal:  Genome Res       Date:  2007-01-02       Impact factor: 9.043

6.  Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome.

Authors:  Masayuki Hashimoto; Toshiharu Ichimura; Hiroshi Mizoguchi; Kimie Tanaka; Kazuyuki Fujimitsu; Kenji Keyamura; Tomotake Ote; Takehiro Yamakawa; Yukiko Yamazaki; Hideo Mori; Tsutomu Katayama; Jun-ichi Kato
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

7.  Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation.

Authors:  Koichi Tamano; Motoaki Sano; Noriko Yamane; Yasunobu Terabayashi; Tomomi Toda; Misao Sunagawa; Hideaki Koike; Osamu Hatamoto; Genryou Umitsuki; Tadashi Takahashi; Yasuji Koyama; Ryoichi Asai; Keietsu Abe; Masayuki Machida
Journal:  Fungal Genet Biol       Date:  2007-09-25       Impact factor: 3.495

8.  Transformation of Aspergillus oryzae using the A. niger pyrG gene.

Authors:  I E Mattern; S Unkles; J R Kinghorn; P H Pouwels; C A van den Hondel
Journal:  Mol Gen Genet       Date:  1987-12

9.  Identification of a basic helix-loop-helix-type transcription regulator gene in Aspergillus oryzae by systematically deleting large chromosomal segments.

Authors:  Feng Jie Jin; Tadashi Takahashi; Masayuki Machida; Yasuji Koyama
Journal:  Appl Environ Microbiol       Date:  2009-07-24       Impact factor: 4.792

10.  Large scale deletions in the Saccharomyces cerevisiae genome create strains with altered regulation of carbon metabolism.

Authors:  Kiriko Murakami; Eriko Tao; Yuki Ito; Minetaka Sugiyama; Yoshinobu Kaneko; Satoshi Harashima; Takahiro Sumiya; Atsushi Nakamura; Masafumi Nishizawa
Journal:  Appl Microbiol Biotechnol       Date:  2007-03-08       Impact factor: 4.813

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  4 in total

1.  Analysis of the functions of recombination-related genes in the generation of large chromosomal deletions by loop-out recombination in Aspergillus oryzae.

Authors:  Tadashi Takahashi; Masahiro Ogawa; Yasuji Koyama
Journal:  Eukaryot Cell       Date:  2012-01-27

2.  Targeted tandem duplication of a large chromosomal segment in Aspergillus oryzae.

Authors:  Tadashi Takahashi; Atsushi Sato; Masahiro Ogawa; Yoshiki Hanya; Tetsuya Oguma
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

3.  A further study on chromosome minimization by protoplast fusion in Aspergillus oryzae.

Authors:  Seiichi Hara; Feng Jie Jin; Tadashi Takahashi; Yasuji Koyama
Journal:  Mol Genet Genomics       Date:  2011-12-30       Impact factor: 3.291

4.  Comparative Chemistry of Aspergillus oryzae (RIB40) and A. flavus (NRRL 3357).

Authors:  Christian Rank; Marie Louise Klejnstrup; Lene Maj Petersen; Sara Kildgaard; Jens Christian Frisvad; Charlotte Held Gotfredsen; Thomas Ostenfeld Larsen
Journal:  Metabolites       Date:  2012-01-05
  4 in total

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