Literature DB >> 19851024

How to get the magic triangle and the MAD triangle into your protein crystal.

Tobias Beck1, Carlos Eduardo da Cunha, George M Sheldrick.   

Abstract

The magic triangle 5-amino-2,4,6-triiodoisophthalic acid (I3C) and the MAD triangle 5-amino-2,4,6-tribromoisophthalic acid (B3C) are two representatives of a novel class of compounds that combine heavy atoms for experimental phasing with functional groups for protein interactions. These compounds are readily available and provide easy access to experimental phasing. The preparation of stock solutions and the incorporation of the compounds into protein crystals are discussed. As an example of incorporation via cocrystallization, the incorporation of B3C into bovine trypsin, resulting in a single site with high occupancy, is described.

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Year:  2009        PMID: 19851024      PMCID: PMC2765903          DOI: 10.1107/S1744309109036884

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

1.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  A magic triangle for experimental phasing of macromolecules.

Authors:  Tobias Beck; Andrius Krasauskas; Tim Gruene; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-10-18

5.  5-Amino-2,4,6-tribromoisophthalic acid: the MAD triangle for experimental phasing.

Authors:  Tobias Beck; Regine Herbst-Irmer; George M Sheldrick
Journal:  Acta Crystallogr C       Date:  2009-04-25       Impact factor: 1.172

6.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37.

Authors:  Katherine H Sippel; Arthur H Robbins; Robbie Reutzel; John Domsic; Susan K Boehlein; Lakshmanan Govindasamy; Mavis Agbandje-McKenna; Charles J Rosser; Robert McKenna
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-10-18

8.  5-Amino-2,4,6-triiodo-isophthalic acid monohydrate.

Authors:  Tobias Beck; George M Sheldrick
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

9.  MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Authors:  Ian W Davis; Andrew Leaver-Fay; Vincent B Chen; Jeremy N Block; Gary J Kapral; Xueyi Wang; Laura W Murray; W Bryan Arendall; Jack Snoeyink; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  9 in total
  5 in total

1.  Laboratory communications in Acta Crystallographica Section F.

Authors:  Manfred S Weiss; Howard Einspahr
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-30

2.  The magic triangle goes MAD: experimental phasing with a bromine derivative.

Authors:  Tobias Beck; Tim Gruene; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

3.  Simplified heavy-atom derivatization of protein structures via co-crystallization with the MAD tetragon tetrabromoterephthalic acid.

Authors:  Jia Q Truong; Stephanie Nguyen; John B Bruning; Keith E Shearwin
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-04-28       Impact factor: 1.056

4.  Structural insights into recognition and repair of UV-DNA damage by Spore Photoproduct Lyase, a radical SAM enzyme.

Authors:  Alhosna Benjdia; Korbinian Heil; Thomas R M Barends; Thomas Carell; Ilme Schlichting
Journal:  Nucleic Acids Res       Date:  2012-07-02       Impact factor: 16.971

5.  Phasing and structure of bestrophin-1: a case study in the use of heavy-atom cluster compounds with multi-subunit transmembrane proteins.

Authors:  Veronica Kane Dickson
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

  5 in total

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