Literature DB >> 33949976

Simplified heavy-atom derivatization of protein structures via co-crystallization with the MAD tetragon tetrabromoterephthalic acid.

Jia Q Truong1, Stephanie Nguyen2, John B Bruning2, Keith E Shearwin1.   

Abstract

The phase problem is a persistent bottleneck that impedes the structure-determination pipeline and must be solved to obtain atomic resolution crystal structures of macromolecules. Although molecular replacement has become the predominant method of solving the phase problem, many scenarios still exist in which experimental phasing is needed. Here, a proof-of-concept study is presented that shows the efficacy of using tetrabromoterephthalic acid (B4C) as an experimental phasing compound. Incorporating B4C into the crystal lattice using co-crystallization, the crystal structure of hen egg-white lysozyme was solved using MAD phasing. The strong anomalous signal generated by its four Br atoms coupled with its compatibility with commonly used crystallization reagents render B4C an effective experimental phasing compound that can be used to overcome the phase problem.

Entities:  

Keywords:  B4C; co-crystallization; crystallography; experimental phasing; lysozyme; tetrabromoterephthalic acid

Mesh:

Substances:

Year:  2021        PMID: 33949976      PMCID: PMC8098126          DOI: 10.1107/S2053230X21004052

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  21 in total

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-11

2.  Breaking good resolutions with ARP/wARP.

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Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

3.  Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment.

Authors:  Santosh Panjikar; Venkataraman Parthasarathy; Victor S Lamzin; Manfred S Weiss; Paul A Tucker
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

Review 4.  The molecular replacement method.

Authors:  M G Rossmann
Journal:  Acta Crystallogr A       Date:  1990-02-01       Impact factor: 2.290

5.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

6.  2.8 A crystal structure of the malachite green aptamer.

Authors:  C Baugh; D Grate; C Wilson
Journal:  J Mol Biol       Date:  2000-08-04       Impact factor: 5.469

7.  Introduction to phasing.

Authors:  Garry L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Selenomethionine and selenocysteine double labeling strategy for crystallographic phasing.

Authors:  Marie Paule Strub; François Hoh; Jean Frédéric Sanchez; Jean Marc Strub; August Böck; André Aumelas; Christian Dumas
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

9.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

Review 10.  An overview of heavy-atom derivatization of protein crystals.

Authors:  Ashley C W Pike; Elspeth F Garman; Tobias Krojer; Frank von Delft; Elisabeth P Carpenter
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

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