Literature DB >> 21202917

5-Amino-2,4,6-triiodo-isophthalic acid monohydrate.

Tobias Beck1, George M Sheldrick.   

Abstract

The title compound, C(8)H(4)I(3)NO(4)·H(2)O, shows an extensive hydrogen-bond network; in the crystal structure, mol-ecules are linked by O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds involving all possible donors and also the water mol-ecule.

Entities:  

Year:  2008        PMID: 21202917      PMCID: PMC2961876          DOI: 10.1107/S1600536808017741

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthetic procedure, see Larsen et al. (1956 ▶). For related crystal structure determinations: 1,3,5-triiodo­benzene, see: Margraf & Bats (2006 ▶); sodium diatrizoate, see: Tonnessen et al. (1996 ▶). For the 1,3,5-triiodo­benzene core as the basis of contrast agents, see: Yu & Watson (1999 ▶).

Experimental

Crystal data

C8H4I3NO4·H2O M = 576.84 Orthorhombic, a = 9.214 (1) Å b = 15.735 (2) Å c = 18.816 (2) Å V = 2728.0 (5) Å3 Z = 8 Cu Kα radiation μ = 54.11 mm−1 T = 100 (2) K 0.08 × 0.05 × 0.03 mm

Data collection

Bruker SMART 6000 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.106, T max = 0.345 (expected range = 0.061–0.197) 49139 measured reflections 2716 independent reflections 2545 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.061 S = 1.03 2716 reflections 173 parameters 14 restraints Only H-atom coordinates refined Δρmax = 0.71 e Å−3 Δρmin = −1.71 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808017741/pk2102sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808017741/pk2102Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H4I3NO4·H2OF000 = 2080
Mr = 576.84Dx = 2.809 Mg m3
Orthorhombic, PbcaCu Kα radiation λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 9945 reflections
a = 9.214 (1) Åθ = 4.7–60.8º
b = 15.735 (2) ŵ = 54.11 mm1
c = 18.816 (2) ÅT = 100 (2) K
V = 2728.0 (5) Å3Block, yellow
Z = 80.08 × 0.05 × 0.03 mm
Bruker SMART 6000 diffractometer2716 independent reflections
Radiation source: rotating anode2545 reflections with I > 2σ(I)
Monochromator: INCOATEC multilayer opticsRint = 0.043
Detector resolution: 5.602 pixels mm-1θmax = 74.3º
T = 100(2) Kθmin = 4.7º
ω scansh = −10→10
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)k = −17→19
Tmin = 0.106, Tmax = 0.345l = −23→23
49139 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Only H-atom coordinates refined
wR(F2) = 0.061  w = 1/[σ2(Fo2) + (0.0277P)2 + 17.3624P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.002
2716 reflectionsΔρmax = 0.72 e Å3
173 parametersΔρmin = −1.71 e Å3
14 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.000058 (8)
Experimental. Intensities were measured with a Bruker SMART 6000 area-detector
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2 σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Hydrogen atoms were located via the difference Fourier map and their geometrical positions were refined with restraints. The U values were set to 1.5 Ueq of their parent atom.
xyzUiso*/Ueq
I11.18424 (3)0.630616 (18)0.012748 (16)0.02419 (10)
I20.71499 (3)0.674286 (18)0.234093 (15)0.02375 (10)
I31.04238 (3)0.979824 (17)0.124476 (17)0.02693 (10)
C11.0827 (5)0.7970 (3)0.0781 (2)0.0161 (8)
C21.0606 (5)0.7094 (3)0.0789 (2)0.0161 (9)
C30.9544 (5)0.6745 (3)0.1231 (2)0.0153 (9)
C40.8655 (5)0.7276 (3)0.1631 (2)0.0163 (9)
C50.8803 (5)0.8172 (3)0.1604 (2)0.0165 (9)
C60.9945 (5)0.8492 (3)0.1199 (2)0.0180 (9)
C71.1981 (5)0.8362 (3)0.0320 (3)0.0202 (10)
O81.1458 (4)0.8648 (2)−0.02803 (18)0.0256 (7)
H81.205 (6)0.883 (4)−0.055 (3)0.038*
O91.3242 (4)0.8414 (2)0.05017 (19)0.0290 (8)
C100.9364 (5)0.5794 (3)0.1285 (2)0.0173 (9)
O111.0376 (4)0.5445 (2)0.16663 (17)0.0224 (7)
H111.031 (7)0.494 (3)0.170 (3)0.034*
O120.8358 (4)0.54161 (19)0.10032 (17)0.0213 (7)
N130.7889 (5)0.8702 (2)0.1997 (2)0.0210 (8)
H13A0.698 (5)0.855 (4)0.204 (3)0.031*
H13B0.785 (6)0.922 (3)0.183 (3)0.031*
O141.0395 (4)0.3834 (2)0.17540 (18)0.0235 (7)
H14A1.074 (7)0.366 (4)0.139 (3)0.035*
H14B1.099 (6)0.376 (4)0.206 (3)0.035*
U11U22U33U12U13U23
I10.02850 (18)0.02100 (16)0.02307 (16)0.00785 (12)0.00724 (12)0.00027 (11)
I20.02603 (18)0.02156 (16)0.02364 (16)−0.00544 (11)0.00910 (12)−0.00016 (11)
I30.02852 (19)0.01260 (15)0.03966 (19)−0.00146 (11)0.00662 (13)0.00096 (11)
C10.018 (2)0.0143 (19)0.0162 (19)0.0012 (17)0.0007 (17)0.0000 (16)
C20.019 (2)0.014 (2)0.0150 (19)0.0033 (17)−0.0002 (17)−0.0002 (16)
C30.020 (2)0.013 (2)0.0135 (19)0.0006 (17)−0.0052 (17)0.0019 (15)
C40.018 (2)0.016 (2)0.0150 (19)−0.0072 (16)0.0005 (17)0.0017 (16)
C50.018 (2)0.015 (2)0.016 (2)0.0003 (17)−0.0023 (17)−0.0006 (16)
C60.023 (2)0.013 (2)0.017 (2)−0.0022 (18)−0.0013 (18)0.0009 (16)
C70.023 (3)0.014 (2)0.023 (2)−0.0007 (17)0.0010 (19)−0.0016 (17)
O80.0251 (19)0.0276 (18)0.0241 (17)−0.0019 (14)0.0036 (15)0.0093 (14)
O90.0216 (19)0.038 (2)0.0276 (18)−0.0045 (15)0.0035 (15)0.0013 (15)
C100.023 (2)0.014 (2)0.015 (2)−0.0007 (18)0.0048 (18)0.0001 (16)
O110.0274 (18)0.0132 (15)0.0265 (17)−0.0007 (13)−0.0074 (14)0.0043 (13)
O120.0279 (18)0.0121 (14)0.0239 (16)−0.0039 (13)−0.0064 (14)0.0014 (12)
N130.021 (2)0.0148 (18)0.027 (2)0.0019 (15)0.0035 (17)−0.0026 (15)
O140.0255 (19)0.0217 (16)0.0233 (17)0.0028 (14)−0.0003 (14)0.0027 (14)
I1—C22.094 (4)C5—N131.396 (6)
I2—C42.100 (4)C7—O91.214 (6)
I3—C62.103 (4)C7—O81.308 (6)
C1—C21.394 (6)O8—H80.80 (5)
C1—C61.398 (6)C10—O121.223 (6)
C1—C71.504 (6)C10—O111.299 (6)
C2—C31.396 (6)O11—H110.79 (5)
C3—C41.391 (6)N13—H13A0.88 (4)
C3—C101.509 (6)N13—H13B0.88 (4)
C4—C51.418 (6)O14—H14A0.81 (4)
C5—C61.393 (6)O14—H14B0.81 (4)
C2—C1—C6119.4 (4)C5—C6—C1122.3 (4)
C2—C1—C7121.0 (4)C5—C6—I3119.3 (3)
C6—C1—C7119.6 (4)C1—C6—I3118.4 (3)
C1—C2—C3119.8 (4)O9—C7—O8125.0 (4)
C1—C2—I1120.0 (3)O9—C7—C1122.7 (4)
C3—C2—I1120.2 (3)O8—C7—C1112.3 (4)
C4—C3—C2120.0 (4)C7—O8—H8115 (5)
C4—C3—C10119.6 (4)O12—C10—O11125.3 (4)
C2—C3—C10120.4 (4)O12—C10—C3122.5 (4)
C3—C4—C5121.3 (4)O11—C10—C3112.3 (4)
C3—C4—I2119.6 (3)C10—O11—H11114 (5)
C5—C4—I2119.0 (3)C5—N13—H13A117 (4)
C6—C5—N13122.0 (4)C5—N13—H13B113 (4)
C6—C5—C4116.9 (4)H13A—N13—H13B105 (6)
N13—C5—C4121.0 (4)H14A—O14—H14B108 (6)
C6—C1—C2—C3−2.2 (6)N13—C5—C6—C1−177.4 (4)
C7—C1—C2—C3179.0 (4)C4—C5—C6—C16.0 (6)
C6—C1—C2—I1176.7 (3)N13—C5—C6—I35.2 (5)
C7—C1—C2—I1−2.0 (5)C4—C5—C6—I3−171.4 (3)
C1—C2—C3—C43.5 (6)C2—C1—C6—C5−2.8 (6)
I1—C2—C3—C4−175.4 (3)C7—C1—C6—C5176.0 (4)
C1—C2—C3—C10−175.6 (4)C2—C1—C6—I3174.7 (3)
I1—C2—C3—C105.5 (5)C7—C1—C6—I3−6.5 (5)
C2—C3—C4—C5−0.1 (6)C2—C1—C7—O9−84.0 (6)
C10—C3—C4—C5179.1 (4)C6—C1—C7—O997.2 (5)
C2—C3—C4—I2−176.2 (3)C2—C1—C7—O897.3 (5)
C10—C3—C4—I23.0 (5)C6—C1—C7—O8−81.5 (5)
C3—C4—C5—C6−4.6 (6)C4—C3—C10—O1275.4 (5)
I2—C4—C5—C6171.5 (3)C2—C3—C10—O12−105.5 (5)
C3—C4—C5—N13178.8 (4)C4—C3—C10—O11−103.6 (4)
I2—C4—C5—N13−5.1 (5)C2—C3—C10—O1175.5 (5)
D—H···AD—HH···AD···AD—H···A
O11—H11···O140.79 (5)1.75 (5)2.540 (5)173 (7)
O8—H8···O12i0.80 (5)1.90 (5)2.662 (5)161 (7)
O14—H14A···O9ii0.81 (4)1.95 (4)2.751 (5)170 (6)
O14—H14B···N13iii0.81 (4)2.05 (4)2.841 (5)166 (6)
N13—H13A···O14iv0.88 (4)2.30 (5)3.067 (6)147 (5)
N13—H13B···O12iv0.88 (4)2.68 (5)3.478 (5)152 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O11—H11⋯O140.79 (5)1.75 (5)2.540 (5)173 (7)
O8—H8⋯O12i0.80 (5)1.90 (5)2.662 (5)161 (7)
O14—H14A⋯O9ii0.81 (4)1.95 (4)2.751 (5)170 (6)
O14—H14B⋯N13iii0.81 (4)2.05 (4)2.841 (5)166 (6)
N13—H13A⋯O14iv0.88 (4)2.30 (5)3.067 (6)147 (5)
N13—H13B⋯O12iv0.88 (4)2.68 (5)3.478 (5)152 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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