Literature DB >> 19843458

Tilt and rotation angles of a transmembrane model peptide as studied by fluorescence spectroscopy.

Andrea Holt1, Rob B M Koehorst, Tania Rutters-Meijneke, Michael H Gelb, Dirk T S Rijkers, Marcus A Hemminga, J Antoinette Killian.   

Abstract

In this study the membrane orientation of a tryptophan-flanked model peptide, WALP23, was determined by using peptides that were labeled at different positions along the sequence with the environmentally sensitive fluorescent label BADAN. The fluorescence properties, reflecting the local polarity, were used to determine the tilt and rotation angles of the peptide based on an ideal alpha-helix model. For WALP23 inserted in dioleoylphosphatidylcholine (DOPC), an estimated tilt angle of the helix with respect to the bilayer normal of 24 degrees +/- 5 degrees was obtained. When the peptides were inserted into bilayers with different acyl chain lengths or containing different concentrations of cholesterol, small changes in tilt angle were observed as response to hydrophobic mismatch, whereas the rotation angle appeared to be independent of lipid composition. In all cases, the tilt angles were significantly larger than those previously determined from (2)H NMR experiments, supporting recent suggestions that the relatively long timescale of (2)H NMR measurements may result in an underestimation of tilt angles due to partial motional averaging. It is concluded that although the fluorescence technique has a rather low resolution and limited accuracy, it can be used to resolve the discrepancies observed between previous (2)H NMR experiments and molecular-dynamics simulations.

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Year:  2009        PMID: 19843458      PMCID: PMC2764067          DOI: 10.1016/j.bpj.2009.07.042

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

1.  Polarity and permeation profiles in lipid membranes.

Authors:  D Marsh
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

2.  Influence of whole-body dynamics on 15N PISEMA NMR spectra of membrane proteins: a theoretical analysis.

Authors:  Santi Esteban-Martín; Erik Strandberg; Gustavo Fuertes; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Hydrophobic mismatch and the incorporation of peptides into lipid bilayers: a possible mechanism for retention in the Golgi.

Authors:  R J Webb; J M East; R P Sharma; A G Lee
Journal:  Biochemistry       Date:  1998-01-13       Impact factor: 3.162

4.  Effects of aromatic residues at the ends of transmembrane alpha-helices on helix interactions with lipid bilayers.

Authors:  S Mall; R Broadbridge; R P Sharma; A G Lee; J M East
Journal:  Biochemistry       Date:  2000-02-29       Impact factor: 3.162

5.  Topological stability and self-association of a completely hydrophobic model transmembrane helix in lipid bilayers.

Authors:  Yoshiaki Yano; Tomokazu Takemoto; Satoe Kobayashi; Hiroyuki Yasui; Hiromu Sakurai; Wakana Ohashi; Miki Niwa; Shiroh Futaki; Yukio Sugiura; Katsumi Matsuzaki
Journal:  Biochemistry       Date:  2002-03-05       Impact factor: 3.162

6.  Interfacial anchor properties of tryptophan residues in transmembrane peptides can dominate over hydrophobic matching effects in peptide-lipid interactions.

Authors:  Maurits R R de Planque; Boyan B Bonev; Jeroen A A Demmers; Denise V Greathouse; Roger E Koeppe; Frances Separovic; Anthony Watts; J Antoinette Killian
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

7.  Lipid bilayer topology of the transmembrane alpha-helix of M13 Major coat protein and bilayer polarity profile by site-directed fluorescence spectroscopy.

Authors:  Rob B M Koehorst; Ruud B Spruijt; Frank J Vergeldt; Marcus A Hemminga
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

8.  Tilt angles of transmembrane model peptides in oriented and non-oriented lipid bilayers as determined by 2H solid-state NMR.

Authors:  Erik Strandberg; Suat Ozdirekcan; Dirk T S Rijkers; Patrick C A van der Wel; Roger E Koeppe; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

9.  Effect of variations in the structure of a polyleucine-based alpha-helical transmembrane peptide on its interaction with phosphatidylcholine bilayers.

Authors:  Feng Liu; Ruthven N A H Lewis; Robert S Hodges; Ronald N McElhaney
Journal:  Biochemistry       Date:  2002-07-23       Impact factor: 3.162

10.  Synthesis and spectral properties of a hydrophobic fluorescent probe: 6-propionyl-2-(dimethylamino)naphthalene.

Authors:  G Weber; F J Farris
Journal:  Biochemistry       Date:  1979-07-10       Impact factor: 3.162

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  25 in total

1.  Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.

Authors:  Luca Monticelli; D Peter Tieleman; Patrick F J Fuchs
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotation.

Authors:  Taehoon Kim; Wonpil Im
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

3.  Order parameters of a transmembrane helix in a fluid bilayer: case study of a WALP peptide.

Authors:  Andrea Holt; Léa Rougier; Valérie Réat; Franck Jolibois; Olivier Saurel; Jerzy Czaplicki; J Antoinette Killian; Alain Milon
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

4.  Probing the lipid-protein interface using model transmembrane peptides with a covalently linked acyl chain.

Authors:  Thomas K M Nyholm; Bianca van Duyl; Dirk T S Rijkers; Rob M J Liskamp; J Antoinette Killian
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

5.  Solid-state NMR ensemble dynamics as a mediator between experiment and simulation.

Authors:  Taehoon Kim; Sunhwan Jo; Wonpil Im
Journal:  Biophys J       Date:  2011-06-22       Impact factor: 4.033

Review 6.  Orientation and dynamics of transmembrane peptides: the power of simple models.

Authors:  Andrea Holt; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2009-12-18       Impact factor: 1.733

7.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

8.  Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness.

Authors:  Afra Panahi; Michael Feig
Journal:  J Chem Theory Comput       Date:  2013-03-12       Impact factor: 6.006

9.  More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.

Authors:  Tristan Bereau; Zun-Jing Wang; Markus Deserno
Journal:  J Chem Phys       Date:  2014-03-21       Impact factor: 3.488

10.  Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths.

Authors:  Rob B M Koehorst; Sergey Laptenok; Bart van Oort; Arie van Hoek; Ruud B Spruijt; Ivo H M van Stokkum; Herbert van Amerongen; Marcus A Hemminga
Journal:  Eur Biophys J       Date:  2009-09-16       Impact factor: 1.733

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