| Literature DB >> 24655203 |
Tristan Bereau1, Zun-Jing Wang1, Markus Deserno1.
Abstract
Interfacial systems are at the core of fascinating phenomena in many disciplines, such as biochemistry, soft-matter physics, and food science. However, the parametrization of accurate, reliable, and consistent coarse-grained (CG) models for systems at interfaces remains a challenging endeavor. In the present work, we explore to what extent two independently developed solvent-free CG models of peptides and lipids--of different mapping schemes, parametrization methods, target functions, and validation criteria--can be combined by only tuning the cross-interactions. Our results show that the cross-parametrization can reproduce a number of structural properties of membrane peptides (for example, tilt and hydrophobic mismatch), in agreement with existing peptide-lipid CG force fields. We find encouraging results for two challenging biophysical problems: (i) membrane pore formation mediated by the cooperative action of several antimicrobial peptides, and (ii) the insertion and folding of the helix-forming peptide WALP23 in the membrane.Entities:
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Year: 2014 PMID: 24655203 PMCID: PMC3977883 DOI: 10.1063/1.4867465
Source DB: PubMed Journal: J Chem Phys ISSN: 0021-9606 Impact factor: 3.488