Literature DB >> 19826082

Evidence that chytrids dominate fungal communities in high-elevation soils.

K R Freeman1, A P Martin, D Karki, R C Lynch, M S Mitter, A F Meyer, J E Longcore, D R Simmons, S K Schmidt.   

Abstract

Periglacial soils are one of the least studied ecosystems on Earth, yet they are widespread and are increasing in area due to retreat of glaciers worldwide. Soils in these environments are cold and during the brief summer are exposed to high levels of UV radiation and dramatic fluctuations in moisture and temperature. Recent research suggests that these environments harbor immense microbial diversity. Here we use sequencing of environmental DNA, culturing of isolates, and analysis of environmental variables to show that members of the Chytridiomycota (chytrids) dominate fungal biodiversity and perhaps decomposition processes in plant-free, high-elevation soils from the highest mountain ranges on Earth. The zoosporic reproduction of chytrids requires free water, yet we found that chytrids constituted over 70% of the ribosomal gene sequences of clone libraries from barren soils of the Himalayas and Rockies; by contrast, they are rare in other soil environments. Very few chytrids have been cultured, although we were successful at culturing chytrids from high-elevation sites throughout the world. In a more focused study of our sites in Colorado, we show that carbon sources that support chytrid growth (eolian deposited pollen and microbial phototrophs) are abundant and that soils are saturated with water for several months under the snow, thus creating ideal conditions for the development of a chytrid-dominated ecosystem. Our work broadens the known biodiversity of the Chytridomycota, and describes previously unsuspected links between aquatic and terrestrial ecosystems in alpine regions.

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Year:  2009        PMID: 19826082      PMCID: PMC2775327          DOI: 10.1073/pnas.0907303106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Seasonal dynamics of previously unknown fungal lineages in tundra soils.

Authors:  Christopher W Schadt; Andrew P Martin; David A Lipson; Steven K Schmidt
Journal:  Science       Date:  2003-09-05       Impact factor: 47.728

2.  Ultrastructural and molecular phylogenetic delineation of a new order, the Rhizophydiales (Chytridiomycota).

Authors:  Peter M Letcher; Martha J Powell; Perry F Churchill; James G Chambers
Journal:  Mycol Res       Date:  2006-08-17

3.  Cladochytriales--a new order in Chytridiomycota.

Authors:  Sharon E Mozley-Standridge; Peter M Letcher; Joyce E Longcore; David Porter; D Rabern Simmons
Journal:  Mycol Res       Date:  2009-04

4.  Diversity of soil fungal communities of Cerrado and its closely surrounding agriculture fields.

Authors:  Alinne Pereira de Castro; Betania Ferraz Quirino; Georgios Pappas; Adriane Silva Kurokawa; Eduardo Leonardecz Neto; Ricardo Henrique Krüger
Journal:  Arch Microbiol       Date:  2008-05-06       Impact factor: 2.552

5.  Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú.

Authors:  S K Schmidt; D R Nemergut; A E Miller; K R Freeman; A J King; A Seimon
Journal:  Extremophiles       Date:  2009-07-12       Impact factor: 2.395

6.  Monarch larvae sensitivity to Bacillus thuringiensis- purified proteins and pollen.

Authors:  R L Hellmich; B D Siegfried; M K Sears; D E Stanley-Horn; M J Daniels; H R Mattila; T Spencer; K G Bidne; L C Lewis
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-14       Impact factor: 11.205

7.  The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.

Authors:  Diana R Nemergut; Alan R Townsend; Sarah R Sattin; Kristen R Freeman; Noah Fierer; Jason C Neff; William D Bowman; Christopher W Schadt; Michael N Weintraub; Steven K Schmidt
Journal:  Environ Microbiol       Date:  2008-09-01       Impact factor: 5.491

8.  Rhizophlyctidales--a new order in Chytridiomycota.

Authors:  Peter M Letcher; Martha J Powell; Donald J S Barr; Perry F Churchill; William S Wakefield; Kathryn T Picard
Journal:  Mycol Res       Date:  2008-04-08

9.  Some Chytridiomycota in soil recover from drying and high temperatures.

Authors:  Frank H Gleason; Peter M Letcher; Peter A McGee
Journal:  Mycol Res       Date:  2004-05

10.  The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils.

Authors:  S K Schmidt; Sasha C Reed; Diana R Nemergut; A Stuart Grandy; Cory C Cleveland; Michael N Weintraub; Andrew W Hill; Elizabeth K Costello; A F Meyer; J C Neff; A M Martin
Journal:  Proc Biol Sci       Date:  2008-12-22       Impact factor: 5.349

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  41 in total

1.  Estimating biodiversity of fungi in activated sludge communities using culture-independent methods.

Authors:  Tegan N Evans; Robert J Seviour
Journal:  Microb Ecol       Date:  2011-12-02       Impact factor: 4.552

2.  Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica.

Authors:  S K Schmidt; R C Lynch; A J King; D Karki; M S Robeson; L Nagy; M W Williams; M S Mitter; K R Freeman
Journal:  Proc Biol Sci       Date:  2010-09-08       Impact factor: 5.349

Review 3.  Can zoosporic true fungi grow or survive in extreme or stressful environments?

Authors:  Frank H Gleason; Steve K Schmidt; Agostina V Marano
Journal:  Extremophiles       Date:  2010-07-18       Impact factor: 2.395

4.  Biogeography and habitat modelling of high-alpine bacteria.

Authors:  Andrew J King; Kristen R Freeman; Katherine F McCormick; Ryan C Lynch; Catherine Lozupone; Rob Knight; Steven K Schmidt
Journal:  Nat Commun       Date:  2010-08-10       Impact factor: 14.919

5.  Assimilation of cellulose-derived carbon by microeukaryotes in oxic and anoxic slurries of an aerated soil.

Authors:  Antonis Chatzinotas; Stefanie Schellenberger; Karin Glaser; Steffen Kolb
Journal:  Appl Environ Microbiol       Date:  2013-07-12       Impact factor: 4.792

6.  Fungal diversity in permafrost and tallgrass prairie soils under experimental warming conditions.

Authors:  C Ryan Penton; Derek St Louis; James R Cole; Yiqi Luo; Liyou Wu; E A G Schuur; Jizhong Zhou; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2013-09-06       Impact factor: 4.792

7.  Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data.

Authors:  Erica Bree Rosenblum; Timothy Y James; Kelly R Zamudio; Thomas J Poorten; Dan Ilut; David Rodriguez; Jonathan M Eastman; Katy Richards-Hrdlicka; Suzanne Joneson; Thomas S Jenkinson; Joyce E Longcore; Gabriela Parra Olea; Luís Felipe Toledo; Maria Luz Arellano; Edgar M Medina; Silvia Restrepo; Sandra Victoria Flechas; Lee Berger; Cheryl J Briggs; Jason E Stajich
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-06       Impact factor: 11.205

8.  Arctic marine fungi: biomass, functional genes, and putative ecological roles.

Authors:  B T Hassett; E J Borrego; T R Vonnahme; T Rämä; M V Kolomiets; R Gradinger
Journal:  ISME J       Date:  2019-02-11       Impact factor: 10.302

Review 9.  The microbial diversity, distribution, and ecology of permafrost in China: a review.

Authors:  Weigang Hu; Qi Zhang; Tian Tian; Guodong Cheng; Lizhe An; Huyuan Feng
Journal:  Extremophiles       Date:  2015-04-30       Impact factor: 2.395

10.  Ignored fungal community in activated sludge wastewater treatment plants: diversity and altitudinal characteristics.

Authors:  Lihua Niu; Yi Li; Lingling Xu; Peifang Wang; Wenlong Zhang; Chao Wang; Wei Cai; Linqiong Wang
Journal:  Environ Sci Pollut Res Int       Date:  2016-12-09       Impact factor: 4.223

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