Literature DB >> 20826485

Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica.

S K Schmidt1, R C Lynch, A J King, D Karki, M S Robeson, L Nagy, M W Williams, M S Mitter, K R Freeman.   

Abstract

High-elevation valleys in dry areas of the Himalayas are among the most extreme, yet least explored environments on Earth. These barren, rocky valleys are subjected to year-round temperature fluctuations across the freezing point and very low availability of water and nutrients, causing previous workers to hypothesize that no photoautotrophic life (primary producers) exists in these locations. However, there has been no work using modern biogeochemical or culture-independent molecular methods to test the hypothesis that photoautotrophs are absent from high Himalayan soil systems. Here, we show that although microbial biomass levels are as low as those of the Dry Valleys of Antarctica, there are abundant microbial photoautotrophs, displaying unexpected phylogenetic diversity, in barren soils from just below the permanent ice line of the central Himalayas. Furthermore, we discovered that one of the dominant algal clades from the high Himalayas also contains the dominant algae in culture-independent surveys of both soil and ice samples from the Dry Valleys of Antarctica, revealing an unexpected link between these environmentally similar but geographically very distant systems. Phylogenetic and biogeographic analyses demonstrated that although this algal clade is globally distributed to other high-altitude and high-latitude soils, it shows significant genetic isolation by geographical distance patterns, indicating local adaptation and perhaps speciation in each region. Our results are the first to demonstrate the remarkable similarities of microbial life of arid soils of Antarctica and the high Himalayas. Our findings are a starting point for future comparative studies of the dry valleys of the Himalayas and Antarctica that will yield new insights into the cold and dry limits to life on Earth.

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Year:  2010        PMID: 20826485      PMCID: PMC3030841          DOI: 10.1098/rspb.2010.1254

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  26 in total

1.  Biogeography and habitat modelling of high-alpine bacteria.

Authors:  Andrew J King; Kristen R Freeman; Katherine F McCormick; Ryan C Lynch; Catherine Lozupone; Rob Knight; Steven K Schmidt
Journal:  Nat Commun       Date:  2010-08-10       Impact factor: 14.919

Review 2.  Microbial biogeography: putting microorganisms on the map.

Authors:  Jennifer B Hughes Martiny; Brendan J M Bohannan; James H Brown; Robert K Colwell; Jed A Fuhrman; Jessica L Green; M Claire Horner-Devine; Matthew Kane; Jennifer Adams Krumins; Cheryl R Kuske; Peter J Morin; Shahid Naeem; Lise Ovreås; Anna-Louise Reysenbach; Val H Smith; James T Staley
Journal:  Nat Rev Microbiol       Date:  2006-02       Impact factor: 60.633

3.  Microbial assemblages in soil microbial succession after glacial retreat in Svalbard (high arctic).

Authors:  Klára Kastovská; Josef Elster; Marek Stibal; Hana Santrůcková
Journal:  Microb Ecol       Date:  2005-11-24       Impact factor: 4.552

4.  Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems.

Authors:  Jeffrey J Walker; Norman R Pace
Journal:  Appl Environ Microbiol       Date:  2007-04-06       Impact factor: 4.792

5.  Hidden levels of phylodiversity in Antarctic green algae: further evidence for the existence of glacial refugia.

Authors:  Aaike De Wever; Frederik Leliaert; Elie Verleyen; Pieter Vanormelingen; Katleen Van der Gucht; Dominic A Hodgson; Koen Sabbe; Wim Vyverman
Journal:  Proc Biol Sci       Date:  2009-07-22       Impact factor: 5.349

6.  A constant flux of diverse thermophilic bacteria into the cold Arctic seabed.

Authors:  Casey Hubert; Alexander Loy; Maren Nickel; Carol Arnosti; Christian Baranyi; Volker Brüchert; Timothy Ferdelman; Kai Finster; Flemming Mønsted Christensen; Júlia Rosa de Rezende; Verona Vandieken; Bo Barker Jørgensen
Journal:  Science       Date:  2009-09-18       Impact factor: 47.728

7.  Life in the allobiosphere.

Authors:  J S Edwards
Journal:  Trends Ecol Evol       Date:  1988-05       Impact factor: 17.712

8.  Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú.

Authors:  S K Schmidt; D R Nemergut; A E Miller; K R Freeman; A J King; A Seimon
Journal:  Extremophiles       Date:  2009-07-12       Impact factor: 2.395

9.  Soil CO2 flux and photoautotrophic community composition in high-elevation, 'barren' soil.

Authors:  Kristen R Freeman; Monte Y Pescador; Sasha C Reed; Elizabeth K Costello; Michael S Robeson; Steven K Schmidt
Journal:  Environ Microbiol       Date:  2009-01-20       Impact factor: 5.491

10.  The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils.

Authors:  S K Schmidt; Sasha C Reed; Diana R Nemergut; A Stuart Grandy; Cory C Cleveland; Michael N Weintraub; Andrew W Hill; Elizabeth K Costello; A F Meyer; J C Neff; A M Martin
Journal:  Proc Biol Sci       Date:  2008-12-22       Impact factor: 5.349

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  15 in total

1.  Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone.

Authors:  Adam J Solon; Lara Vimercati; J L Darcy; Pablo Arán; Dorota Porazinska; C Dorador; M E Farías; S K Schmidt
Journal:  Microb Ecol       Date:  2018-01-05       Impact factor: 4.552

2.  Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally.

Authors:  Michael S Robeson; Andrew J King; Kristen R Freeman; C William Birky; Andrew P Martin; Steven K Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

3.  Microbial Ecology of Snow Reveals Taxa-Specific Biogeographical Structure.

Authors:  Shawn P Brown; Ari Jumpponen
Journal:  Microb Ecol       Date:  2019-03-13       Impact factor: 4.552

4.  Growth of cyanobacterial soil crusts during diurnal freeze-thaw cycles.

Authors:  Steven K Schmidt; Lara Vimercati
Journal:  J Microbiol       Date:  2019-02-05       Impact factor: 3.422

5.  Freeze-thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú.

Authors:  S K Schmidt; J L Darcy; Pacifica Sommers; Eva Gunawan; J E Knelman; Karina Yager
Journal:  Extremophiles       Date:  2017-03-21       Impact factor: 2.395

Review 6.  Characterizing microbial communities through space and time.

Authors:  Antonio Gonzalez; Andrew King; Michael S Robeson; Sejin Song; Ashley Shade; Jessica L Metcalf; Rob Knight
Journal:  Curr Opin Biotechnol       Date:  2011-12-07       Impact factor: 9.740

7.  Metagenomic evidence for sulfur lithotrophy by Epsilonproteobacteria as the major energy source for primary productivity in a sub-aerial arctic glacial deposit, Borup Fiord Pass.

Authors:  Katherine E Wright; Charles Williamson; Stephen E Grasby; John R Spear; Alexis S Templeton
Journal:  Front Microbiol       Date:  2013-04-22       Impact factor: 5.640

8.  Global distribution of Polaromonas phylotypes--evidence for a highly successful dispersal capacity.

Authors:  John L Darcy; Ryan C Lynch; Andrew J King; Michael S Robeson; Steven K Schmidt
Journal:  PLoS One       Date:  2011-08-29       Impact factor: 3.240

9.  Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships.

Authors:  Maggie C Y Lau; Connor Cameron; Cara Magnabosco; C Titus Brown; Faye Schilkey; Sharon Grim; Sarah Hendrickson; Michael Pullin; Barbara Sherwood Lollar; Esta van Heerden; Thomas L Kieft; Tullis C Onstott
Journal:  Front Microbiol       Date:  2014-10-31       Impact factor: 5.640

10.  Gullies and Moraines Are Islands of Biodiversity in an Arid, Mountain Landscape, Asgard Range, Antarctica.

Authors:  Adam J Solon; Claire Mastrangelo; Lara Vimercati; Pacifica Sommers; John L Darcy; Eli M S Gendron; Dorota L Porazinska; S K Schmidt
Journal:  Front Microbiol       Date:  2021-06-10       Impact factor: 5.640

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