Literature DB >> 20975720

Biogeography and habitat modelling of high-alpine bacteria.

Andrew J King1, Kristen R Freeman, Katherine F McCormick, Ryan C Lynch, Catherine Lozupone, Rob Knight, Steven K Schmidt.   

Abstract

Soil microorganisms dominate terrestrial biogeochemical cycles; however, we know very little about their spatial distribution and how changes in the distributions of specific groups of microbes translate into landscape and global patterns of biogeochemical processes. In this paper, we use a nested sampling scheme at scales ranging from 2 to 2,000 m to show that bacteria have significant spatial autocorrelation in community composition up to a distance of 240 m, and that this pattern is driven by changes in the relative abundance of specific bacterial clades across the landscape. Analysis of clade habitat distribution models and spatial co-correlation maps identified soil pH, plant abundance and snow depth as major variables structuring bacterial communities across this landscape, and revealed an unexpected and important oligotrophic niche for the Rhodospirillales in soil. Furthermore, our global analysis of high-elevation soils from the Andes, Rockies, Himalayas and Alaskan range shows that habitat distribution models for bacteria have a strong predictive power across the entire globe.

Entities:  

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Year:  2010        PMID: 20975720     DOI: 10.1038/ncomms1055

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  22 in total

1.  Spatial scaling of microbial eukaryote diversity.

Authors:  Jessica L Green; Andrew J Holmes; Mark Westoby; Ian Oliver; David Briscoe; Mark Dangerfield; Michael Gillings; Andrew J Beattie
Journal:  Nature       Date:  2004-12-09       Impact factor: 49.962

2.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

3.  Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem.

Authors:  Alban Ramette; James M Tiedje
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-12       Impact factor: 11.205

4.  Winter forest soil respiration controlled by climate and microbial community composition.

Authors:  Russell K Monson; David L Lipson; Sean P Burns; Andrew A Turnipseed; Anthony C Delany; Mark W Williams; Steven K Schmidt
Journal:  Nature       Date:  2006-02-09       Impact factor: 49.962

5.  Ecoenzymatic stoichiometry of microbial organic nutrient acquisition in soil and sediment.

Authors:  Robert L Sinsabaugh; Brian H Hill; Jennifer J Follstad Shah
Journal:  Nature       Date:  2009-12-10       Impact factor: 49.962

Review 6.  The microbial engines that drive Earth's biogeochemical cycles.

Authors:  Paul G Falkowski; Tom Fenchel; Edward F Delong
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

7.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

8.  Metagenomic sequencing of an in vitro-simulated microbial community.

Authors:  Jenna L Morgan; Aaron E Darling; Jonathan A Eisen
Journal:  PLoS One       Date:  2010-04-16       Impact factor: 3.240

9.  The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.

Authors:  Diana R Nemergut; Alan R Townsend; Sarah R Sattin; Kristen R Freeman; Noah Fierer; Jason C Neff; William D Bowman; Christopher W Schadt; Michael N Weintraub; Steven K Schmidt
Journal:  Environ Microbiol       Date:  2008-09-01       Impact factor: 5.491

10.  A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.

Authors:  Ryan T Jones; Michael S Robeson; Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
Journal:  ISME J       Date:  2009-01-08       Impact factor: 10.302

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  39 in total

1.  Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica.

Authors:  S K Schmidt; R C Lynch; A J King; D Karki; M S Robeson; L Nagy; M W Williams; M S Mitter; K R Freeman
Journal:  Proc Biol Sci       Date:  2010-09-08       Impact factor: 5.349

Review 2.  Patterns and processes of microbial community assembly.

Authors:  Diana R Nemergut; Steven K Schmidt; Tadashi Fukami; Sean P O'Neill; Teresa M Bilinski; Lee F Stanish; Joseph E Knelman; John L Darcy; Ryan C Lynch; Phillip Wickey; Scott Ferrenberg
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

3.  Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone.

Authors:  Adam J Solon; Lara Vimercati; J L Darcy; Pablo Arán; Dorota Porazinska; C Dorador; M E Farías; S K Schmidt
Journal:  Microb Ecol       Date:  2018-01-05       Impact factor: 4.552

4.  Soil rotifer communities are extremely diverse globally but spatially autocorrelated locally.

Authors:  Michael S Robeson; Andrew J King; Kristen R Freeman; C William Birky; Andrew P Martin; Steven K Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

Review 5.  Our microbial selves: what ecology can teach us.

Authors:  Antonio Gonzalez; Jose C Clemente; Ashley Shade; Jessica L Metcalf; Sejin Song; Bharath Prithiviraj; Brent E Palmer; Rob Knight
Journal:  EMBO Rep       Date:  2011-07-01       Impact factor: 8.807

6.  Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake.

Authors:  Eli Michael S Gendron; John L Darcy; Katherinia Hell; Steven K Schmidt
Journal:  J Microbiol       Date:  2019-08-03       Impact factor: 3.422

7.  Freeze-thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú.

Authors:  S K Schmidt; J L Darcy; Pacifica Sommers; Eva Gunawan; J E Knelman; Karina Yager
Journal:  Extremophiles       Date:  2017-03-21       Impact factor: 2.395

8.  Reproducibility of Vibrionaceae population structure in coastal bacterioplankton.

Authors:  Gitta Szabo; Sarah P Preheim; Kathryn M Kauffman; Lawrence A David; Jesse Shapiro; Eric J Alm; Martin F Polz
Journal:  ISME J       Date:  2012-11-22       Impact factor: 10.302

9.  Bacterial community structure on two alpine debris-covered glaciers and biogeography of Polaromonas phylotypes.

Authors:  Andrea Franzetti; Valeria Tatangelo; Isabella Gandolfi; Valentina Bertolini; Giuseppina Bestetti; Guglielmina Diolaiuti; Carlo D'Agata; Claudia Mihalcea; Claudio Smiraglia; Roberto Ambrosini
Journal:  ISME J       Date:  2013-03-28       Impact factor: 10.302

10.  Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes.

Authors:  Jianjun Wang; Ji Shen; Yucheng Wu; Chen Tu; Janne Soininen; James C Stegen; Jizheng He; Xingqi Liu; Lu Zhang; Enlou Zhang
Journal:  ISME J       Date:  2013-02-28       Impact factor: 10.302

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