Literature DB >> 19597697

Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú.

S K Schmidt1, D R Nemergut, A E Miller, K R Freeman, A J King, A Seimon.   

Abstract

High-elevation periglacial soils are among the most extreme soil systems on Earth and may be good analogs for the polar regions of Mars where oligotrophic mineral soils abut with polar ice caps. Here we report on preliminary studies carried out during an expedition to an area where recent glacial retreat has exposed porous mineral soils to extreme, daily freeze-thaw cycles and high UV fluxes. We used in situ methods to show that inorganic nitrogen (NO(3) (-) and NH(4) (+)) was being actively cycled even during a period when diurnal soil temperatures (5 cm depth) ranged from -12 to 27 degrees C and when sub-zero, soil cooling rates reached 1.8 degrees C h(-1) (the most rapid soil cooling rates recorded to date). Furthermore, phylogenetic analyses of microbial phylotypes present at our highest sites (5410 m above sea level) showed the presence of nitrifying bacteria of the genus Nitrospira and newly discovered nitrite-oxidizing Betaproteobacteria. These soils were overwhelmingly dominated (>70% of phylotypes) by photosynthetic bacteria that were related to novel cyanobacteria previously found almost exclusively in other plant-free, high-elevation soils. We also demonstrated that soils from our highest sites had higher potential for mineralizing glutamate and higher microbial biomass than lower elevation soils that had been more recently covered by ice. Overall, our findings indicate that a diverse and robustly functioning microbial ecosystem is present in these previously unstudied high-elevation soils.

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Year:  2009        PMID: 19597697     DOI: 10.1007/s00792-009-0268-9

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  34 in total

1.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

2.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

3.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  Ammonia-oxidising Crenarchaeota: important players in the nitrogen cycle?

Authors:  Graeme W Nicol; Christa Schleper
Journal:  Trends Microbiol       Date:  2006-04-17       Impact factor: 17.079

5.  Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil.

Authors:  S K Schmidt; E K Costello; D R Nemergut; C C Cleveland; S C Reed; M N Weintraub; A F Meyer; A M Martin
Journal:  Ecology       Date:  2007-06       Impact factor: 5.499

6.  Heterotrophic microbial communities use ancient carbon following glacial retreat.

Authors:  Richard D Bardgett; Andreas Richter; Roland Bol; Mark H Garnett; Rupert Bäumler; Xinliang Xu; Elisa Lopez-Capel; David A C Manning; Phil J Hobbs; Ian R Hartley; Wolfgang Wanek
Journal:  Biol Lett       Date:  2007-10-22       Impact factor: 3.703

Review 7.  Using the general linear mixed model to analyse unbalanced repeated measures and longitudinal data.

Authors:  A Cnaan; N M Laird; P Slasor
Journal:  Stat Med       Date:  1997-10-30       Impact factor: 2.373

8.  Limits to life at low temperatures and at reduced water contents and water activities.

Authors:  P Mazur
Journal:  Orig Life       Date:  1980-06

9.  Plant-microbe competition for soil amino acids in the alpine tundra: effects of freeze-thaw and dry-rewet events.

Authors:  David A Lipson; Russell K Monson
Journal:  Oecologia       Date:  1998-01       Impact factor: 3.225

10.  The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.

Authors:  Diana R Nemergut; Alan R Townsend; Sarah R Sattin; Kristen R Freeman; Noah Fierer; Jason C Neff; William D Bowman; Christopher W Schadt; Michael N Weintraub; Steven K Schmidt
Journal:  Environ Microbiol       Date:  2008-09-01       Impact factor: 5.491

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  27 in total

1.  Pattern of elemental release during the granite dissolution can be changed by aerobic heterotrophic bacterial strains isolated from Damma Glacier (central Alps) deglaciated granite sand.

Authors:  Aleš Lapanje; Celine Wimmersberger; Gerhard Furrer; Ivano Brunner; Beat Frey
Journal:  Microb Ecol       Date:  2011-11-22       Impact factor: 4.552

2.  Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica.

Authors:  S K Schmidt; R C Lynch; A J King; D Karki; M S Robeson; L Nagy; M W Williams; M S Mitter; K R Freeman
Journal:  Proc Biol Sci       Date:  2010-09-08       Impact factor: 5.349

Review 3.  Can zoosporic true fungi grow or survive in extreme or stressful environments?

Authors:  Frank H Gleason; Steve K Schmidt; Agostina V Marano
Journal:  Extremophiles       Date:  2010-07-18       Impact factor: 2.395

4.  Bacterial Diversity in Microbial Mats and Sediments from the Atacama Desert.

Authors:  Maria Cecilia Rasuk; Ana Beatriz Fernández; Daniel Kurth; Manuel Contreras; Fernando Novoa; Daniel Poiré; María Eugenia Farías
Journal:  Microb Ecol       Date:  2015-07-30       Impact factor: 4.552

5.  Comparison of bacterial diversity in proglacial soil from Kafni Glacier, Himalayan Mountain ranges, India, with the bacterial diversity of other glaciers in the world.

Authors:  T N R Srinivas; S M Singh; Suman Pradhan; M S Pratibha; K Hara Kishore; Ashish K Singh; Z Begum; S R Prabagaran; G S N Reddy; S Shivaji
Journal:  Extremophiles       Date:  2011-09-15       Impact factor: 2.395

6.  Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation.

Authors:  Boris Nowka; Holger Daims; Eva Spieck
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

7.  Growth of cyanobacterial soil crusts during diurnal freeze-thaw cycles.

Authors:  Steven K Schmidt; Lara Vimercati
Journal:  J Microbiol       Date:  2019-02-05       Impact factor: 3.422

8.  Freeze-thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú.

Authors:  S K Schmidt; J L Darcy; Pacifica Sommers; Eva Gunawan; J E Knelman; Karina Yager
Journal:  Extremophiles       Date:  2017-03-21       Impact factor: 2.395

9.  Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment.

Authors:  Kento Ishii; Hirotsugu Fujitani; Kentaro Soh; Tatsunori Nakagawa; Reiji Takahashi; Satoshi Tsuneda
Journal:  Appl Environ Microbiol       Date:  2017-06-30       Impact factor: 4.792

10.  Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

Authors:  Jennifer Hüpeden; Simone Wegen; Sandra Off; Sebastian Lücker; Yvonne Bedarf; Holger Daims; Carsten Kühn; Eva Spieck
Journal:  Appl Environ Microbiol       Date:  2016-01-08       Impact factor: 4.792

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