Literature DB >> 19823773

Analysis of the amide (15)N chemical shift tensor of the C(alpha) tetrasubstituted constituent of membrane-active peptaibols, the alpha-aminoisobutyric acid residue, compared to those of di- and tri-substituted proteinogenic amino acid residues.

Evgeniy Salnikov1, Philippe Bertani, Jan Raap, Burkhard Bechinger.   

Abstract

In protein NMR spectroscopy the chemical shift provides important information for the assignment of residues and a first structural evaluation of dihedral angles. Furthermore, angular restraints are obtained from oriented samples by solution and solid-state NMR spectroscopic approaches. Whereas the anisotropy of chemical shifts, quadrupolar couplings and dipolar interactions have been used to determine the structure, dynamics and topology of oriented membrane polypeptides using solid-state NMR spectroscopy similar concepts have been introduced to solution NMR through the measurements of residual dipolar couplings. The analysis of (15)N chemical shift spectra depends on the accuracy of the chemical shift tensors. When investigating alamethicin and other peptaibols, i.e. polypeptides rich in alpha-aminoisobutyric acid (Aib), the (15)N chemical shift tensor of this C(alpha)-tetrasubstituted amino acid exhibits pronounced differences when compared to glycine, alanine and other proteinogenic residues. Here we present an experimental investigation on the (15)N amide Aib tensor of N-acetyl-Aib-OH and for the Aib residues within peptaibols. Furthermore, a statistical analysis of the tensors published for di- (glycine) and tri-substituted residues has been performed, where for the first time the published data sets are compiled using a common reference. The size of the isotropic chemical shift and main tensor elements follows the order di- < tri- < tetra-substituted amino acids. A (15)N chemical shift-(1)H-(15)N dipolar coupling correlation NMR spectrum of alamethicin is used to evaluate the consequences of variations in the main tensor elements for the structural analysis of this membrane peptide.

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Year:  2009        PMID: 19823773     DOI: 10.1007/s10858-009-9380-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  38 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Transmembrane domain of M2 protein from influenza A virus studied by solid-state (15)N polarization inversion spin exchange at magic angle NMR.

Authors:  Z Song; F A Kovacs; J Wang; J K Denny; S C Shekar; J R Quine; T A Cross
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

Review 3.  Residual dipolar couplings in NMR structure analysis.

Authors:  Rebecca S Lipsitz; Nico Tjandra
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

Review 4.  Weak alignment NMR: a hawk-eyed view of biomolecular structure.

Authors:  Ad Bax; Alexander Grishaev
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

Review 5.  NMR residual dipolar couplings as probes of biomolecular dynamics.

Authors:  Joel R Tolman; Ke Ruan
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

Review 6.  Structure and functions of channel-forming peptides: magainins, cecropins, melittin and alamethicin.

Authors:  B Bechinger
Journal:  J Membr Biol       Date:  1997-04-01       Impact factor: 1.843

7.  Investigations of polypeptide rotational diffusion in aligned membranes by 2H and 15N solid-state NMR spectroscopy.

Authors:  Christopher Aisenbrey; Burkhard Bechinger
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

8.  Alamethicin and related peptaibols--model ion channels.

Authors:  M S Sansom
Journal:  Eur Biophys J       Date:  1993       Impact factor: 1.733

9.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

10.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

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  14 in total

1.  Structure and topology of the huntingtin 1-17 membrane anchor by a combined solution and solid-state NMR approach.

Authors:  Matthias Michalek; Evgeniy S Salnikov; Burkhard Bechinger
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

2.  Probing the transmembrane structure and dynamics of microsomal NADPH-cytochrome P450 oxidoreductase by solid-state NMR.

Authors:  Rui Huang; Kazutoshi Yamamoto; Meng Zhang; Nataliya Popovych; Ivan Hung; Sang-Choul Im; Zhehong Gan; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biophys J       Date:  2014-05-20       Impact factor: 4.033

3.  Membrane interactions of phylloseptin-1, -2, and -3 peptides by oriented solid-state NMR spectroscopy.

Authors:  Jarbas M Resende; Rodrigo M Verly; Christopher Aisenbrey; Amary Cesar; Philippe Bertani; Dorila Piló-Veloso; Burkhard Bechinger
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

4.  Solid-State NMR Investigations of the MHC II Transmembrane Domains: Topological Equilibria and Lipid Interactions.

Authors:  Christopher Aisenbrey; Evgeniy S Salnikov; Burkhard Bechinger
Journal:  J Membr Biol       Date:  2019-06-11       Impact factor: 1.843

5.  Supramolecular Organization of Apolipoprotein-A-I-Derived Peptides within Disc-like Arrangements.

Authors:  Evgeniy S Salnikov; G M Anantharamaiah; Burkhard Bechinger
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

6.  Probing the Huntingtin 1-17 membrane anchor on a phospholipid bilayer by using all-atom simulations.

Authors:  Sébastien Côté; Vincent Binette; Evgeniy S Salnikov; Burkhard Bechinger; Normand Mousseau
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

7.  A theoretical assessment of structure determination of multi-span membrane proteins by oriented sample solid-state NMR spectroscopy.

Authors:  Daniel K Weber; Gianluigi Veglia
Journal:  Aust J Chem       Date:  2019-09-20       Impact factor: 1.321

8.  Membrane interactions of Ocellatins. Where do antimicrobial gaps stem from?

Authors:  José Muñoz-López; Jade C L Oliveira; Daniel A G R Michel; Carolina S Ferreira; Francisco Gomes Neto; Evgeniy S Salnikov; Rodrigo M Verly; Burkhard Bechinger; Jarbas M Resende
Journal:  Amino Acids       Date:  2021-07-12       Impact factor: 3.520

9.  A kink in DWORF helical structure controls the activation of the sarcoplasmic reticulum Ca2+-ATPase.

Authors:  U Venkateswara Reddy; Daniel K Weber; Songlin Wang; Erik K Larsen; Tata Gopinath; Alfonso De Simone; Seth Robia; Gianluigi Veglia
Journal:  Structure       Date:  2021-12-06       Impact factor: 5.006

10.  (14)N overtone NMR under MAS: signal enhancement using symmetry-based sequences and novel simulation strategies.

Authors:  Ibraheem M Haies; James A Jarvis; Harry Bentley; Ivo Heinmaa; Ilya Kuprov; Philip T F Williamson; Marina Carravetta
Journal:  Phys Chem Chem Phys       Date:  2015-03-07       Impact factor: 3.676

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