Literature DB >> 19820973

Topological analysis of aromatic halogen/hydrogen bonds by electron charge density and electrostatic potentials.

Darío J R Duarte1, Margarita M de las Vallejos, Nélida M Peruchena.   

Abstract

In this work, the intermolecular distribution of the electronic charge density in the aromatic hydrogen/halogen bonds is studied within the framework of the atoms in molecules (AIM) theory and the molecular electrostatic potentials (MEP) analysis. The study is carried out in nine complexes formed between benzene and simple lineal molecules, where hydrogen, fluorine and chlorine atoms act as bridge atoms. All the results are obtained at MP2 level theory using cc-pVTZ basis set. Attention is focused on topological features observed at the intermolecular region such as bond, ring and cage critical points of the electron density, as well as the bond path, the gradient of the density maps, molecular graphs and interatomic surfaces. The strength of the interaction increases in the following order: F[Symbol: see text]pi < Cl[Symbol: see text]pi < H[Symbol: see text]pi. Our results show that the fluorine atom has the capability to interact with the pi-cloud to form an aromatic halogen bond, as long as the donor group is highly electron withdrawing. The Laplacian topology allows us to state that the halogen atoms can act as nucleophiles as well as electrophiles, showing clearly their dual character.

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Year:  2009        PMID: 19820973     DOI: 10.1007/s00894-009-0558-2

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  12 in total

1.  Olefinic vs. aromatic pi-H interaction: a theoretical investigation of the nature of interaction of first-row hydrides with ethene and benzene.

Authors:  P Tarakeshwar; H S Choi; K S Kim
Journal:  J Am Chem Soc       Date:  2001-04-11       Impact factor: 15.419

2.  Blue-Shifting Hydrogen Bonds.

Authors:  Pavel Hobza; Zdenek Havlas
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

3.  Structural aspects of interatomic charge-transfer bonding.

Authors:  O Hassel
Journal:  Science       Date:  1970-10-30       Impact factor: 47.728

4.  Topology of charge density of flucytosine and related molecules and characteristics of their bond charge distributions.

Authors:  Juan Murgich; Héctor J Franco; Gioconda San-Blas
Journal:  J Phys Chem A       Date:  2006-08-24       Impact factor: 2.781

5.  Saturated hydrocarbon-benzene complexes: theoretical study of cooperative CH/pi interactions.

Authors:  Jiong Ran; Ming Wah Wong
Journal:  J Phys Chem A       Date:  2006-08-10       Impact factor: 2.781

6.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

7.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

8.  Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donors.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2007-03-15       Impact factor: 1.810

9.  Theoretical analysis of the electronic properties of the sex pheromone and its analogue derivatives in the female processionary moth Thaumetopoea pytiocampa.

Authors:  Ester R Chamorro; Alfredo F Sequeira; M Fernanda Zalazar; Nélida M Peruchena
Journal:  Bioorg Med Chem       Date:  2008-08-07       Impact factor: 3.641

10.  Hydrogen bonds with pi and sigma electrons as the multicenter proton acceptors: high level ab initio calculations.

Authors:  Sławomir Janusz Grabowski
Journal:  J Phys Chem A       Date:  2007-04-06       Impact factor: 2.781

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  12 in total

1.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

2.  Interplay between halogen bonds and hydrogen bonds in OH/SH···HOX···HY (X = Cl, Br; Y = F, Cl, Br) complexes.

Authors:  Wenjie Wu; Yanli Zeng; Xiaoyan Li; Xueying Zhang; Shijun Zheng; Lingpeng Meng
Journal:  J Mol Model       Date:  2012-11-01       Impact factor: 1.810

3.  Investigation of H-bonding and halogen-bonding effects in dichloroacetic acid: DFT calculations of NQR parameters and QTAIM analysis.

Authors:  Mehdi D Esrafili
Journal:  J Mol Model       Date:  2012-06-27       Impact factor: 1.810

4.  Theoretical study of the complementarity in halogen-bonded complexes involving nitrogen and halogen as negative sites.

Authors:  Mehdi D Esrafili; Mahshad Vakili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2014-02-13       Impact factor: 1.810

5.  A theoretical study on the halogen bonding interactions of C6F5I with a series of group 10 metal monohalides.

Authors:  Na Cheng; Yongjun Liu; Changqiao Zhang; Chengbu Liu
Journal:  J Mol Model       Date:  2013-06-25       Impact factor: 1.810

6.  Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

7.  A theoretical investigation of the characteristics of hydrogen/halogen bonding interactions in dibromo-nitroaniline.

Authors:  Mehdi D Esrafili
Journal:  J Mol Model       Date:  2012-12-08       Impact factor: 1.810

8.  Nature of halogen bonding. A study based on the topological analysis of the Laplacian of the electron charge density and an energy decomposition analysis.

Authors:  Darío J R Duarte; Gladis L Sosa; Nélida M Peruchena
Journal:  J Mol Model       Date:  2012-10-18       Impact factor: 1.810

9.  Density functional studies on photophysical properties and chemical reactivities of the triarylboranes: effect of the constraint of planarity.

Authors:  Jun-Ling Jin; Hai-Bin Li; Tian Lu; Yu-Ai Duan; Yun Geng; Yong Wu; Zhong-Min Su
Journal:  J Mol Model       Date:  2013-05-25       Impact factor: 1.810

10.  New Type of Halogen Bond: Multivalent Halogen Interacting with π- and σ-Electrons.

Authors:  Sławomir J Grabowski
Journal:  Molecules       Date:  2017-12-05       Impact factor: 4.411

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