Literature DB >> 19763154

The evolutionary consequences of erroneous protein synthesis.

D Allan Drummond1, Claus O Wilke.   

Abstract

Errors in protein synthesis disrupt cellular fitness, cause disease phenotypes and shape gene and genome evolution. Experimental and theoretical results on this topic have accumulated rapidly in disparate fields, such as neurobiology, protein biosynthesis and degradation and molecular evolution, but with limited communication among disciplines. Here, we review studies of error frequencies, the cellular and organismal consequences of errors and the attendant long-range evolutionary responses to errors. We emphasize major areas in which little is known, such as the failure rates of protein folding, in addition to areas in which technological innovations may enable imminent gains, such as the elucidation of translational missense error frequencies. Evolutionary responses to errors fall into two broad categories: adaptations that minimize errors and their attendant costs and adaptations that exploit errors for the organism's benefit.

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Year:  2009        PMID: 19763154      PMCID: PMC2764353          DOI: 10.1038/nrg2662

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  100 in total

1.  Evidence for a protein mutator in yeast: role of the Hsp70-related chaperone ssb in formation, stability, and toxicity of the [PSI] prion.

Authors:  Y O Chernoff; G P Newnam; J Kumar; K Allen; A D Zink
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  Inhibited cell growth and protein functional changes from an editing-defective tRNA synthetase.

Authors:  Jamie M Bacher; Valérie de Crécy-Lagard; Paul R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-12       Impact factor: 11.205

3.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

4.  Global effects of mistranslation from an editing defect in mammalian cells.

Authors:  Leslie A Nangle; Candace M Motta; Paul Schimmel
Journal:  Chem Biol       Date:  2006-10

5.  Quantifying the impact of protein tertiary structure on molecular evolution.

Authors:  Sang Chul Choi; Asger Hobolth; Douglas M Robinson; Hirohisa Kishino; Jeffrey L Thorne
Journal:  Mol Biol Evol       Date:  2007-05-23       Impact factor: 16.240

6.  Novel ribosomal mutations affecting translational accuracy, antibiotic resistance and virulence of Salmonella typhimurium.

Authors:  J Björkman; P Samuelsson; D I Andersson; D Hughes
Journal:  Mol Microbiol       Date:  1999-01       Impact factor: 3.501

7.  The origin of mutants.

Authors:  J Cairns; J Overbaugh; S Miller
Journal:  Nature       Date:  1988-09-08       Impact factor: 49.962

8.  Rapid, transcript-specific changes in splicing in response to environmental stress.

Authors:  Jeffrey A Pleiss; Gregg B Whitworth; Megan Bergkessel; Christine Guthrie
Journal:  Mol Cell       Date:  2007-09-21       Impact factor: 17.970

9.  Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.

Authors:  Ino Agrafioti; Jonathan Swire; James Abbott; Derek Huntley; Sarah Butcher; Michael P H Stumpf
Journal:  BMC Evol Biol       Date:  2005-03-18       Impact factor: 3.260

10.  Progressive disruption of cellular protein folding in models of polyglutamine diseases.

Authors:  Tali Gidalevitz; Anat Ben-Zvi; Kim H Ho; Heather R Brignull; Richard I Morimoto
Journal:  Science       Date:  2006-02-09       Impact factor: 63.714

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  238 in total

1.  Codon bias, tRNA pools and horizontal gene transfer.

Authors:  Tamir Tuller
Journal:  Mob Genet Elements       Date:  2011-05

Review 2.  Error prevention and mitigation as forces in the evolution of genes and genomes.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

Review 3.  Evolutionary optimization of speed and accuracy of decoding on the ribosome.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Joerg Mittelstaet; Andrey L Konevega; Marina V Rodnina
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

4.  Optimization of speed and accuracy of decoding in translation.

Authors:  Ingo Wohlgemuth; Corinna Pohl; Marina V Rodnina
Journal:  EMBO J       Date:  2010-09-14       Impact factor: 11.598

5.  Visualizing high error levels during gene expression in living bacterial cells.

Authors:  Mor Meyerovich; Gideon Mamou; Sigal Ben-Yehuda
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

Review 6.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

7.  Evolution of molecular error rates and the consequences for evolvability.

Authors:  Etienne Rajon; Joanna Masel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-03       Impact factor: 11.205

8.  Sequential duplications of an ancient member of the DnaJ-family expanded the functional chaperone network in the eukaryotic cytosol.

Authors:  Chandan Sahi; Jacek Kominek; Thomas Ziegelhoffer; Hyun Young Yu; Maciej Baranowski; Jaroslaw Marszalek; Elizabeth A Craig
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

9.  Codon misreading tRNAs promote tumor growth in mice.

Authors:  Mafalda Santos; Patricia M Pereira; A Sofia Varanda; Joana Carvalho; Mafalda Azevedo; Denisa D Mateus; Nuno Mendes; Patricia Oliveira; Fábio Trindade; Marta Teixeira Pinto; Renata Bordeira-Carriço; Fátima Carneiro; Rui Vitorino; Carla Oliveira; Manuel A S Santos
Journal:  RNA Biol       Date:  2018-06-07       Impact factor: 4.652

10.  TRNA mutations that affect decoding fidelity deregulate development and the proteostasis network in zebrafish.

Authors:  Marisa Reverendo; Ana R Soares; Patrícia M Pereira; Laura Carreto; Violeta Ferreira; Evelina Gatti; Philippe Pierre; Gabriela R Moura; Manuel A Santos
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

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