Literature DB >> 21199946

Evolution of molecular error rates and the consequences for evolvability.

Etienne Rajon1, Joanna Masel.   

Abstract

Making genes into gene products is subject to predictable errors, each with a phenotypic effect that depends on a normally cryptic sequence. Many cryptic sequences have strongly deleterious effects, for example when they cause protein misfolding. Strongly deleterious effects can be avoided globally by avoiding making errors (e.g., via proofreading machinery) or locally by ensuring that each error has a relatively benign effect. The local solution requires powerful selection acting on every cryptic site and so evolves only in large populations. Small populations with less effective selection evolve global solutions. Here we show that for a large range of realistic intermediate population sizes, the evolutionary dynamics are bistable and either solution may result. The local solution facilitates the genetic assimilation of cryptic genetic variation and therefore substantially increases evolvability.

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Year:  2011        PMID: 21199946      PMCID: PMC3024668          DOI: 10.1073/pnas.1012918108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

1.  RIBOSOME CONTENT AND THE RATE OF GROWTH OF SALMONELLA TYPHIMURIUM.

Authors:  R E ECKER; M SCHAECHTER
Journal:  Biochim Biophys Acta       Date:  1963-10-15

2.  Cryptic genetic variation is enriched for potential adaptations.

Authors:  Joanna Masel
Journal:  Genetics       Date:  2005-12-30       Impact factor: 4.562

3.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

4.  Multiple defects in translation associated with altered ribosomal protein L4.

Authors:  Michael O'Connor; Steven T Gregory; Albert E Dahlberg
Journal:  Nucleic Acids Res       Date:  2004-10-27       Impact factor: 16.971

5.  The selection-mutation-drift theory of synonymous codon usage.

Authors:  M Bulmer
Journal:  Genetics       Date:  1991-11       Impact factor: 4.562

Review 6.  Mutations affecting fitness in Drosophila populations.

Authors:  M J Simmons; J F Crow
Journal:  Annu Rev Genet       Date:  1977       Impact factor: 16.830

7.  Growth-optimizing accuracy of gene expression.

Authors:  C G Kurland; M Ehrenberg
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

8.  Genome-wide prediction of stop codon readthrough during translation in the yeast Saccharomyces cerevisiae.

Authors:  I Williams; J Richardson; A Starkey; I Stansfield
Journal:  Nucleic Acids Res       Date:  2004-12-15       Impact factor: 16.971

9.  Quantitation of readthrough of termination codons in yeast using a novel gene fusion assay.

Authors:  M Firoozan; C M Grant; J A Duarte; M F Tuite
Journal:  Yeast       Date:  1991-02       Impact factor: 3.239

10.  Conservation of tandem stop codons in yeasts.

Authors:  Han Liang; Andre R O Cavalcanti; Laura F Landweber
Journal:  Genome Biol       Date:  2005-03-15       Impact factor: 13.583

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  38 in total

Review 1.  Error prevention and mitigation as forces in the evolution of genes and genomes.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

2.  Mistranslation drives the evolution of robustness in TEM-1 β-lactamase.

Authors:  Sinisa Bratulic; Florian Gerber; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

3.  The evolution of genetic architectures underlying quantitative traits.

Authors:  Etienne Rajon; Joshua B Plotkin
Journal:  Proc Biol Sci       Date:  2013-08-28       Impact factor: 5.349

4.  The consequences of rare sexual reproduction by means of selfing in an otherwise clonally reproducing species.

Authors:  Joanna Masel; David N Lyttle
Journal:  Theor Popul Biol       Date:  2011-08-24       Impact factor: 1.570

5.  Drift Barriers to Quality Control When Genes Are Expressed at Different Levels.

Authors:  Kun Xiong; Jay P McEntee; David J Porfirio; Joanna Masel
Journal:  Genetics       Date:  2016-11-11       Impact factor: 4.562

6.  Extraordinarily rapid life-history divergence between Cryptasterina sea star species.

Authors:  Jonathan B Puritz; Carson C Keever; Jason A Addison; Maria Byrne; Michael W Hart; Richard K Grosberg; Robert J Toonen
Journal:  Proc Biol Sci       Date:  2012-07-18       Impact factor: 5.349

Review 7.  Answering evolutionary questions: A guide for mechanistic biologists.

Authors:  Joanna Masel; Daniel E L Promislow
Journal:  Bioessays       Date:  2016-05-06       Impact factor: 4.345

8.  Transcriptional errors and the drift barrier.

Authors:  David M McCandlish; Joshua B Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-10       Impact factor: 11.205

9.  Readthrough Errors Purge Deleterious Cryptic Sequences, Facilitating the Birth of Coding Sequences.

Authors:  Luke J Kosinski; Joanna Masel
Journal:  Mol Biol Evol       Date:  2020-06-01       Impact factor: 16.240

10.  Compensatory evolution and the origins of innovations.

Authors:  Etienne Rajon; Joanna Masel
Journal:  Genetics       Date:  2013-01-18       Impact factor: 4.562

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