Literature DB >> 19756203

CELL SEGMENTATION USING HESSIAN-BASED DETECTION AND CONTOUR EVOLUTION WITH DIRECTIONAL DERIVATIVES.

I Ersoy1, F Bunyak, M A Mackey, K Palaniappan.   

Abstract

The large amount of data produced by biological live cell imaging studies of cell behavior requires accurate automated cell segmentation algorithms for rapid, unbiased and reproducible scientific analysis. This paper presents a new approach to obtain precise boundaries of cells with complex shapes using ridge measures for initial detection and a modified geodesic active contour for curve evolution that exploits the halo effect present in phase-contrast microscopy. The level set contour evolution is controlled by a novel spatially adaptive stopping function based on the intensity profile perpendicular to the evolving front. The proposed approach is tested on human cancer cell images from LSDCAS and achieves high accuracy even in complex environments.

Entities:  

Year:  2008        PMID: 19756203      PMCID: PMC2743148          DOI: 10.1109/ICIP.2008.4712127

Source DB:  PubMed          Journal:  Proc Int Conf Image Proc        ISSN: 1522-4880


  8 in total

1.  Development of the large scale digital cell analysis system.

Authors:  F Ianzini; M A Mackey
Journal:  Radiat Prot Dosimetry       Date:  2002       Impact factor: 0.972

2.  Ridge-based vessel segmentation in color images of the retina.

Authors:  Joes Staal; Michael D Abràmoff; Meindert Niemeijer; Max A Viergever; Bram van Ginneken
Journal:  IEEE Trans Med Imaging       Date:  2004-04       Impact factor: 10.048

3.  Cell segmentation using coupled level sets and graph-vertex coloring.

Authors:  Sumit K Nath; Kannappan Palaniappan; Filiz Bunyak
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

4.  The large-scale digital cell analysis system: an open system for nonperturbing live cell imaging.

Authors:  Paul J Davis; Elizabeth A Kosmacek; Yuansheng Sun; Fiorenza Ianzini; Michael A Mackey
Journal:  J Microsc       Date:  2007-12       Impact factor: 1.758

5.  Automatic segmentation of high-throughput RNAi fluorescent cellular images.

Authors:  P Yan; X Zhou; M Shah; S T C Wong
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-01

6.  Active contours without edges.

Authors:  T F Chan; L A Vese
Journal:  IEEE Trans Image Process       Date:  2001       Impact factor: 10.856

7.  Flux Tensor Constrained Geodesic Active Contours with Sensor Fusion for Persistent Object Tracking.

Authors:  Filiz Bunyak; Kannappan Palaniappan; Sumit Kumar Nath; Gunasekaran Seetharaman
Journal:  J Multimed       Date:  2007-08

8.  QUANTITATIVE CELL MOTILITY FOR IN VITRO WOUND HEALING USING LEVEL SET-BASED ACTIVE CONTOUR TRACKING.

Authors:  Filiz Bunyak; Kannappan Palaniappan; Sumit K Nath; Tobias I Baskin; Gang Dong
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2006-04-06
  8 in total
  7 in total

1.  Influence of membrane cholesterol and substrate elasticity on endothelial cell spreading behavior.

Authors:  Zhongkui Hong; Ilker Ersoy; Mingzhai Sun; Filiz Bunyak; Paul Hampel; Zhenling Hong; Zhe Sun; Zhaohui Li; Irena Levitan; Gerald A Meininger; Kannappan Palaniappan
Journal:  J Biomed Mater Res A       Date:  2012-12-13       Impact factor: 4.396

2.  Real-time halo correction in phase contrast imaging.

Authors:  Mikhail E Kandel; Michael Fanous; Catherine Best-Popescu; Gabriel Popescu
Journal:  Biomed Opt Express       Date:  2018-01-16       Impact factor: 3.732

3.  ECM-Aware Cell-Graph Mining for Bone Tissue Modeling and Classification.

Authors:  Cemal Cagatay Bilgin; Peter Bullough; George E Plopper; Bülent Yener
Journal:  Data Min Knowl Discov       Date:  2009-10-21       Impact factor: 3.670

4.  Tracking cells in Life Cell Imaging videos using topological alignments.

Authors:  Axel Mosig; Stefan Jäger; Chaofeng Wang; Sumit Nath; Ilker Ersoy; Kannap-pan Palaniappan; Su-Shing Chen
Journal:  Algorithms Mol Biol       Date:  2009-07-16       Impact factor: 1.405

5.  Segmentation of the Clustered Cells with Optimized Boundary Detection in Negative Phase Contrast Images.

Authors:  Yuliang Wang; Zaicheng Zhang; Huimin Wang; Shusheng Bi
Journal:  PLoS One       Date:  2015-06-12       Impact factor: 3.240

6.  A Novel Method for Effective Cell Segmentation and Tracking in Phase Contrast Microscopic Images.

Authors:  Hongju Jo; Junghun Han; Yoon Suk Kim; Yongheum Lee; Sejung Yang
Journal:  Sensors (Basel)       Date:  2021-05-18       Impact factor: 3.576

7.  Multicell migration tracking within angiogenic networks by deep learning-based segmentation and augmented Bayesian filtering.

Authors:  Mengmeng Wang; Lee-Ling Sharon Ong; Justin Dauwels; H Harry Asada
Journal:  J Med Imaging (Bellingham)       Date:  2018-06-13
  7 in total

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