Literature DB >> 29552399

Real-time halo correction in phase contrast imaging.

Mikhail E Kandel1, Michael Fanous2, Catherine Best-Popescu2, Gabriel Popescu1,2.   

Abstract

As a label-free, nondestructive method, phase contrast is by far the most popular microscopy technique for routine inspection of cell cultures. However, features of interest such as extensions near cell bodies are often obscured by a glow, which came to be known as the halo. Advances in modeling image formation have shown that this artifact is due to the limited spatial coherence of the illumination. Nevertheless, the same incoherent illumination is responsible for superior sensitivity to fine details in the phase contrast geometry. Thus, there exists a trade-off between high-detail (incoherent) and low-detail (coherent) imaging systems. In this work, we propose a method to break this dichotomy, by carefully mixing corrected low-frequency and high-frequency data in a way that eliminates the edge effect. Specifically, our technique is able to remove halo artifacts at video rates, requiring no manual interaction or a priori point spread function measurements. To validate our approach, we imaged standard spherical beads, sperm cells, tissue slices, and red blood cells. We demonstrate real-time operation with a time evolution study of adherent neuron cultures whose neurites are revealed by our halo correction. We show that with our novel technique, we can quantify cell growth in large populations, without the need for thresholds and system variant calibration.

Keywords:  (030.1670) Coherent optical effects; (170.3010) Image reconstruction techniques; (999.9999) Quantitative phase imaging

Year:  2018        PMID: 29552399      PMCID: PMC5854064          DOI: 10.1364/BOE.9.000623

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  54 in total

1.  Whole optical wavefields reconstruction by digital holography.

Authors:  S Grilli; P Ferraro; S De Nicola; A Finizio; G Pierattini; R Meucci
Journal:  Opt Express       Date:  2001-09-10       Impact factor: 3.894

2.  Quantitative phase microscopy of articular chondrocyte dynamics by wide-field digital interferometry.

Authors:  Natan T Shaked; John D Finan; Farshid Guilak; Adam Wax
Journal:  J Biomed Opt       Date:  2010 Jan-Feb       Impact factor: 3.170

3.  Enhanced quantitative phase imaging in self-interference digital holographic microscopy using an electrically focus tunable lens.

Authors:  Robin Schubert; Angelika Vollmer; Steffi Ketelhut; Björn Kemper
Journal:  Biomed Opt Express       Date:  2014-11-10       Impact factor: 3.732

4.  Label-free high temporal resolution assessment of cell proliferation using digital holographic microscopy.

Authors:  Birgit Janicke; Andreas Kårsnäs; Peter Egelberg; Kersti Alm
Journal:  Cytometry A       Date:  2017-04-24       Impact factor: 4.355

5.  Cell density modulates intracellular mass transport in neural networks.

Authors:  Patricia Cintora; Jyothi Arikkath; Mikhail Kandel; Gabriel Popescu; Catherine Best-Popescu
Journal:  Cytometry A       Date:  2017-05-02       Impact factor: 4.355

6.  Topography and refractometry of sperm cells using spatial light interference microscopy.

Authors:  Lina Liu; Mikhail E Kandel; Marcello Rubessa; Sierra Schreiber; Mathew B Wheeler; Gabriel Popescu
Journal:  J Biomed Opt       Date:  2018-02       Impact factor: 3.170

7.  3D-Printed pHEMA Materials for Topographical and Biochemical Modulation of Dorsal Root Ganglion Cell Response.

Authors:  Adina Badea; Joselle M McCracken; Emily G Tillmaand; Mikhail E Kandel; Aaron W Oraham; Molly B Mevis; Stanislav S Rubakhin; Gabriel Popescu; Jonathan V Sweedler; Ralph G Nuzzo
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-31       Impact factor: 9.229

8.  CELL SEGMENTATION USING HESSIAN-BASED DETECTION AND CONTOUR EVOLUTION WITH DIRECTIONAL DERIVATIVES.

Authors:  I Ersoy; F Bunyak; M A Mackey; K Palaniappan
Journal:  Proc Int Conf Image Proc       Date:  2008-10-12

9.  In vivo assessment by Mach-Zehnder double-beam interferometry of the invasive force exerted by the Asian soybean rust fungus (Phakopsora pachyrhizi).

Authors:  Marco Loehrer; Jens Botterweck; Joachim Jahnke; Daniel M Mahlmann; Jochem Gaetgens; Marco Oldiges; Ralf Horbach; Holger Deising; Ulrich Schaffrath
Journal:  New Phytol       Date:  2014-04-11       Impact factor: 10.151

10.  Automated method for the rapid and precise estimation of adherent cell culture characteristics from phase contrast microscopy images.

Authors:  Nicolas Jaccard; Lewis D Griffin; Ana Keser; Rhys J Macown; Alexandre Super; Farlan S Veraitch; Nicolas Szita
Journal:  Biotechnol Bioeng       Date:  2013-10-05       Impact factor: 4.530

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  12 in total

1.  Super-resolution microscopy for biological specimens: lensless phase retrieval in noisy conditions.

Authors:  Igor Shevkunov; Vladimir Katkovnik; Nikolay V Petrov; Karen Egiazarian
Journal:  Biomed Opt Express       Date:  2018-10-17       Impact factor: 3.732

2.  High-speed interferometric imaging reveals dynamics of neuronal deformation during the action potential.

Authors:  Tong Ling; Kevin C Boyle; Valentina Zuckerman; Thomas Flores; Charu Ramakrishnan; Karl Deisseroth; Daniel Palanker
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-27       Impact factor: 11.205

3.  Cell-to-cell influence on growth in large populations.

Authors:  Mikhail E Kandel; Wenlong Lu; Jon Liang; Onur Aydin; Taher A Saif; Gabriel Popescu
Journal:  Biomed Opt Express       Date:  2019-08-20       Impact factor: 3.732

4.  Spatial light interference microscopy: principle and applications to biomedicine.

Authors:  Xi Chen; Mikhail E Kandel; Gabriel Popescu
Journal:  Adv Opt Photonics       Date:  2021-05-05       Impact factor: 24.750

5.  A gradient-based, GPU-accelerated, high-precision contour-segmentation algorithm with application to cell membrane fluctuation spectroscopy.

Authors:  Michael Mell; Francisco Monroy
Journal:  PLoS One       Date:  2018-12-06       Impact factor: 3.240

6.  Label-free classification of cells based on supervised machine learning of subcellular structures.

Authors:  Yusuke Ozaki; Hidenao Yamada; Hirotoshi Kikuchi; Amane Hirotsu; Tomohiro Murakami; Tomohiro Matsumoto; Toshiki Kawabata; Yoshihiro Hiramatsu; Kinji Kamiya; Toyohiko Yamauchi; Kentaro Goto; Yukio Ueda; Shigetoshi Okazaki; Masatoshi Kitagawa; Hiroya Takeuchi; Hiroyuki Konno
Journal:  PLoS One       Date:  2019-01-29       Impact factor: 3.240

7.  Three dimensions, two microscopes, one code: Automatic differentiation for x-ray nanotomography beyond the depth of focus limit.

Authors:  Ming Du; Youssef S G Nashed; Saugat Kandel; Doğa Gürsoy; Chris Jacobsen
Journal:  Sci Adv       Date:  2020-03-27       Impact factor: 14.136

8.  Label-free screening of brain tissue myelin content using phase imaging with computational specificity (PICS).

Authors:  Michael Fanous; Chuqiao Shi; Megan P Caputo; Laurie A Rund; Rodney W Johnson; Tapas Das; Matthew J Kuchan; Nahil Sobh; Gabriel Popescu
Journal:  APL Photonics       Date:  2021-07-12

9.  Wolf phase tomography (WPT) of transparent structures using partially coherent illumination.

Authors:  Xi Chen; Mikhail E Kandel; Chenfei Hu; Young Jae Lee; Gabriel Popescu
Journal:  Light Sci Appl       Date:  2020-08-19       Impact factor: 17.782

10.  Network science characteristics of brain-derived neuronal cultures deciphered from quantitative phase imaging data.

Authors:  Chenzhong Yin; Xiongye Xiao; Valeriu Balaban; Mikhail E Kandel; Young Jae Lee; Gabriel Popescu; Paul Bogdan
Journal:  Sci Rep       Date:  2020-09-15       Impact factor: 4.379

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