Literature DB >> 19578557

QUANTITATIVE CELL MOTILITY FOR IN VITRO WOUND HEALING USING LEVEL SET-BASED ACTIVE CONTOUR TRACKING.

Filiz Bunyak1, Kannappan Palaniappan, Sumit K Nath, Tobias I Baskin, Gang Dong.   

Abstract

Quantifying the behavior of cells individually, and in clusters as part of a population, under a range of experimental conditions, is a challenging computational task with many biological applications. We propose a versatile algorithm for segmentation and tracking of multiple motile epithelial cells during wound healing using time-lapse video. The segmentation part of the proposed method relies on a level set-based active contour algorithm that robustly handles a large number of cells. The tracking part relies on a detection-based multiple-object tracking method with delayed decision enabled by multi-hypothesis testing. The combined method is robust to complex cell behavior including division and apoptosis, and to imaging artifacts such as illumination changes.

Year:  2006        PMID: 19578557      PMCID: PMC2705119          DOI: 10.1109/ISBI.2006.1625099

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  5 in total

1.  Quantitative study of dynamic behavior of cell monolayers during in vitro wound healing by optical flow analysis.

Authors:  X Ronot; A Doisy; P Tracqui
Journal:  Cytometry       Date:  2000-09-01

2.  Multiple rows of cells behind an epithelial wound edge extend cryptic lamellipodia to collectively drive cell-sheet movement.

Authors:  Rizwan Farooqui; Gabriel Fenteany
Journal:  J Cell Sci       Date:  2004-12-07       Impact factor: 5.285

3.  Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

Authors:  Alexandre Dufour; Vasily Shinin; Shahragim Tajbakhsh; Nancy Guillén-Aghion; Jean-Christophe Olivo-Marin; Christophe Zimmer
Journal:  IEEE Trans Image Process       Date:  2005-09       Impact factor: 10.856

4.  Quantification of microtubule nucleation, growth and dynamics in wound-edge cells.

Authors:  Kimberly J Salaycik; Carey J Fagerstrom; Kausalya Murthy; U Serdar Tulu; Patricia Wadsworth
Journal:  J Cell Sci       Date:  2005-08-23       Impact factor: 5.285

5.  Active contours without edges.

Authors:  T F Chan; L A Vese
Journal:  IEEE Trans Image Process       Date:  2001       Impact factor: 10.856

  5 in total
  21 in total

1.  Cell segmentation using coupled level sets and graph-vertex coloring.

Authors:  Sumit K Nath; Kannappan Palaniappan; Filiz Bunyak
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

2.  Flux Tensor Constrained Geodesic Active Contours with Sensor Fusion for Persistent Object Tracking.

Authors:  Filiz Bunyak; Kannappan Palaniappan; Sumit Kumar Nath; Gunasekaran Seetharaman
Journal:  J Multimed       Date:  2007-08

3.  Cell population tracking and lineage construction with spatiotemporal context.

Authors:  Kang Li; Eric D Miller; Mei Chen; Takeo Kanade; Lee E Weiss; Phil G Campbell
Journal:  Med Image Anal       Date:  2008-06-18       Impact factor: 8.545

4.  Multi-feature contour evolution for automatic live cell segmentation in time lapse imagery.

Authors:  Ilker Ersoy; Kannappan Palaniappan
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2008

5.  Cell spreading analysis with directed edge profile-guided level set active contours.

Authors:  I Ersoy; F Bunyak; K Palaniappan; M Sun; G Forgacs
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

6.  Automated tracking and analysis of phospholipid vesicle contours in phase contrast microscopy images.

Authors:  Peter Usenik; Tomaž Vrtovec; Franjo Pernuš; Boštjan Likar
Journal:  Med Biol Eng Comput       Date:  2011-06-28       Impact factor: 2.602

7.  Superresolution microscope image reconstruction by spatiotemporal object decomposition and association: application in resolving t-tubule structure in skeletal muscle.

Authors:  Mingzhai Sun; Jiaqing Huang; Filiz Bunyak; Kristyn Gumpper; Gejing De; Matthew Sermersheim; George Liu; Pei-Hui Lin; Kannappan Palaniappan; Jianjie Ma
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

8.  Segmentation and classification of cell cycle phases in fluorescence imaging.

Authors:  Ilker Ersoy; Filiz Bunyak; Vadim Chagin; M Christina Cardoso; Kannappan Palaniappan
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

9.  Efficient Segmentation Using Feature-based Graph Partitioning Active Contours.

Authors:  Filiz Bunyak; Kannappan Palaniappan
Journal:  Proc IEEE Int Conf Comput Vis       Date:  2009-09-29

10.  CELL SEGMENTATION USING HESSIAN-BASED DETECTION AND CONTOUR EVOLUTION WITH DIRECTIONAL DERIVATIVES.

Authors:  I Ersoy; F Bunyak; M A Mackey; K Palaniappan
Journal:  Proc Int Conf Image Proc       Date:  2008-10-12
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