Literature DB >> 19748343

Probing the accessibility of the Mn(4)Ca cluster in photosystem II: channels calculation, noble gas derivatization, and cocrystallization with DMSO.

Azat Gabdulkhakov1, Albert Guskov, Matthias Broser, Jan Kern, Frank Müh, Wolfram Saenger, Athina Zouni.   

Abstract

Using the 2.9 A resolution structure of the membrane-intrinsic protein-cofactor complex photosystem II (PSII) from the cyanobacterium Thermosynechococcus elongatus, we calculated and characterized nine possible substrate/product channels leading to/away from the Mn(4)Ca cluster, where water is oxidized to dioxygen, protons, and electrons. Five narrow channels could function in proton transport, assuming that no large structural changes are associated with water oxidation. Four wider channels could serve to supply water to or remove oxygen from the Mn(4)Ca cluster. One of them might be regulated by conformational changes of Lys134 in subunit PsbU. Data analyses of Kr derivatized crystals and complexes with dimethyl sulfoxide (DMSO) confirm the accessibility of the proposed dioxygen channels to other molecules. Results from Xe derivatization suggest that the lipid clusters within PSII could serve as a drain for oxygen because of their predominant hydrophobic character and mediate dioxygen release from the lumen.

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Year:  2009        PMID: 19748343     DOI: 10.1016/j.str.2009.07.010

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  22 in total

Review 1.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

2.  Radiolytic mapping of solvent-contact surfaces in Photosystem II of higher plants: experimental identification of putative water channels within the photosystem.

Authors:  Laurie K Frankel; Larry Sallans; Henry Bellamy; Jost S Goettert; Patrick A Limbach; Terry M Bricker
Journal:  J Biol Chem       Date:  2013-06-28       Impact factor: 5.157

3.  Structural basis of cyanobacterial photosystem II Inhibition by the herbicide terbutryn.

Authors:  Matthias Broser; Carina Glöckner; Azat Gabdulkhakov; Albert Guskov; Joachim Buchta; Jan Kern; Frank Müh; Holger Dau; Wolfram Saenger; Athina Zouni
Journal:  J Biol Chem       Date:  2011-03-02       Impact factor: 5.157

4.  Structurally conserved channels in cyanobacterial and plant photosystem II.

Authors:  Naoki Sakashita; Hiroshi C Watanabe; Takuya Ikeda; Hiroshi Ishikita
Journal:  Photosynth Res       Date:  2017-02-10       Impact factor: 3.573

5.  Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329.

Authors:  Rachel J Service; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

6.  D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine YZ for proton exit during water oxidation.

Authors:  Ryo Nagao; Hanayo Ueoka-Nakanishi; Takumi Noguchi
Journal:  J Biol Chem       Date:  2017-10-18       Impact factor: 5.157

7.  Identification of oxidized amino acid residues in the vicinity of the Mn(4)CaO(5) cluster of Photosystem II: implications for the identification of oxygen channels within the Photosystem.

Authors:  Laurie K Frankel; Larry Sallans; Patrick A Limbach; Terry M Bricker
Journal:  Biochemistry       Date:  2012-08-02       Impact factor: 3.162

8.  Mobile hydrogen carbonate acts as proton acceptor in photosynthetic water oxidation.

Authors:  Sergey Koroidov; Dmitriy Shevela; Tatiana Shutova; Göran Samuelsson; Johannes Messinger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-07       Impact factor: 11.205

9.  Participation of glutamate-354 of the CP43 polypeptide in the ligation of manganese and the binding of substrate water in photosystem II.

Authors:  Rachel J Service; Junko Yano; Iain McConnell; Hong Jin Hwang; Dimitri Niks; Russ Hille; Tom Wydrzynski; Robert L Burnap; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-12-08       Impact factor: 3.162

10.  Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism.

Authors:  Mohamed Ibrahim; Thomas Fransson; Ruchira Chatterjee; Mun Hon Cheah; Rana Hussein; Louise Lassalle; Kyle D Sutherlin; Iris D Young; Franklin D Fuller; Sheraz Gul; In-Sik Kim; Philipp S Simon; Casper de Lichtenberg; Petko Chernev; Isabel Bogacz; Cindy C Pham; Allen M Orville; Nicholas Saichek; Trent Northen; Alexander Batyuk; Sergio Carbajo; Roberto Alonso-Mori; Kensuke Tono; Shigeki Owada; Asmit Bhowmick; Robert Bolotovsky; Derek Mendez; Nigel W Moriarty; James M Holton; Holger Dobbek; Aaron S Brewster; Paul D Adams; Nicholas K Sauter; Uwe Bergmann; Athina Zouni; Johannes Messinger; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-20       Impact factor: 11.205

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