Literature DB >> 20593803

Evidence from FTIR difference spectroscopy of an extensive network of hydrogen bonds near the oxygen-evolving Mn(4)Ca cluster of photosystem II involving D1-Glu65, D2-Glu312, and D1-Glu329.

Rachel J Service1, Warwick Hillier, Richard J Debus.   

Abstract

Analyses of the refined X-ray crystallographic structures of photosystem II (PSII) at 2.9-3.5 A have revealed the presence of possible channels for the removal of protons from the catalytic Mn(4)Ca cluster during the water-splitting reaction. As an initial attempt to verify these channels experimentally, the presence of a network of hydrogen bonds near the Mn(4)Ca cluster was probed with FTIR difference spectroscopy in a spectral region sensitive to the protonation states of carboxylate residues and, in particular, with a negative band at 1747 cm(-1) that is often observed in the S(2)-minus-S(1) FTIR difference spectrum of PSII from the cyanobacterium Synechocystis sp. PCC 6803. On the basis of its 4 cm(-1) downshift in D(2)O, this band was assigned to the carbonyl stretching vibration (C horizontal lineO) of a protonated carboxylate group whose pK(a) decreases during the S(1) to S(2) transition. The positive charge that forms on the Mn(4)Ca cluster during the S(1) to S(2) transition presumably causes structural perturbations that are transmitted to this carboxylate group via electrostatic interactions and/or an extended network of hydrogen bonds. In an attempt to identify the carboxylate group that gives rise to this band, the FTIR difference spectra of PSII core complexes from the mutants D1-Asp61Ala, D1-Glu65Ala, D1-Glu329Gln, and D2-Glu312Ala were examined. In the X-ray crystallographic models, these are the closest carboxylate residues to the Mn(4)Ca cluster that do not ligate Mn or Ca and all are highly conserved. The 1747 cm(-1) band is present in the S(2)-minus-S(1) FTIR difference spectrum of D1-Asp61Ala but absent from the corresponding spectra of D1-Glu65Ala, D2-Glu312Ala, and D1-Glu329Gln. The band is also sharply diminished in magnitude in the wild type when samples are maintained at a relative humidity of </=85%. It is proposed that D1-Glu65, D2-Glu312, and D1-Glu329 participate in a common network of hydrogen bonds that includes water molecules and the carboxylate group that gives rise to the 1747 cm(-1) band. It is further proposed that the mutation of any of these three residues, or partial dehydration caused by maintaining samples at a relative humidity of <or=85%, disrupts the network sufficiently that the structural perturbations associated with the S(1) to S(2) transition are no longer transmitted to the carboxylate group that gives rise to the 1747 cm(-1) band. Because D1-Glu329 is located approximately 20 A from D1-Glu65 and D2-Glu312, the postulated network of hydrogen bonds must extend for at least 20 A across the lumenal face of the Mn(4)Ca cluster. The D1-Asp61Ala, D1-Glu65Ala, and D2-Glu312Ala mutations also appear to substantially decrease the fraction of PSII reaction centers that undergo the S(3) to S(0) transition in response to a saturating flash. This behavior is consistent with D1-Asp61, D1-Glu65, and D2-Glu312 participating in a dominant proton egress channel that links the Mn(4)Ca cluster with the thylakoid lumen.

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Year:  2010        PMID: 20593803      PMCID: PMC2917469          DOI: 10.1021/bi100730d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  107 in total

Review 1.  Reaction-induced infrared difference spectroscopy for the study of protein reaction mechanisms.

Authors:  C Zscherp; A Barth
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

2.  Electron transfer and dynamic infrared-band coalescence: it looks like dynamic NMR spectroscopy, but a billion times faster.

Authors:  Casey H Londergan; Clifford P Kubiak
Journal:  Chemistry       Date:  2003-12-15       Impact factor: 5.236

Review 3.  Water-splitting chemistry of photosystem II.

Authors:  James P McEvoy; Gary W Brudvig
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

4.  Solvent-mediated proton transfer in catalysis by carbonic anhydrase.

Authors:  David N Silverman; Robert McKenna
Journal:  Acc Chem Res       Date:  2007-06-06       Impact factor: 22.384

5.  Glu46 donates a proton to the 4-hydroxycinnamate anion chromophore during the photocycle of photoactive yellow protein.

Authors:  A Xie; W D Hoff; A R Kroon; K J Hellingwerf
Journal:  Biochemistry       Date:  1996-11-26       Impact factor: 3.162

6.  Tracking the flow of water through photosystem II using molecular dynamics and streamline tracing.

Authors:  Serguei Vassiliev; Pascal Comte; Abdullah Mahboob; Doug Bruce
Journal:  Biochemistry       Date:  2010-03-09       Impact factor: 3.162

7.  Glutamate-354 of the CP43 polypeptide interacts with the oxygen-evolving Mn4Ca cluster of photosystem II: a preliminary characterization of the Glu354Gln mutant.

Authors:  Melodie A Strickler; Hong Jin Hwang; Robert L Burnap; Junko Yano; Lee M Walker; Rachel J Service; R David Britt; Warwick Hillier; Richard J Debus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-03-27       Impact factor: 6.237

8.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

Review 9.  FTIR detection of water reactions in the oxygen-evolving centre of photosystem II.

Authors:  Takumi Noguchi
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-03-27       Impact factor: 6.237

10.  Energetics of a possible proton exit pathway for water oxidation in photosystem II.

Authors:  Hiroshi Ishikita; Wolfram Saenger; Bernhard Loll; Jacek Biesiadka; Ernst-Walter Knapp
Journal:  Biochemistry       Date:  2006-02-21       Impact factor: 3.162

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  19 in total

1.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å.

Authors:  Yasufumi Umena; Keisuke Kawakami; Jian-Ren Shen; Nobuo Kamiya
Journal:  Nature       Date:  2011-04-17       Impact factor: 49.962

2.  A hydrogen-bonding network plays a catalytic role in photosynthetic oxygen evolution.

Authors:  Brandon C Polander; Bridgette A Barry
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  Warwick Hillier: a tribute.

Authors:  Johannes Messinger; Richard Debus; G Charles Dismukes
Journal:  Photosynth Res       Date:  2014-07-20       Impact factor: 3.573

4.  D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine YZ for proton exit during water oxidation.

Authors:  Ryo Nagao; Hanayo Ueoka-Nakanishi; Takumi Noguchi
Journal:  J Biol Chem       Date:  2017-10-18       Impact factor: 5.157

5.  Participation of glutamate-354 of the CP43 polypeptide in the ligation of manganese and the binding of substrate water in photosystem II.

Authors:  Rachel J Service; Junko Yano; Iain McConnell; Hong Jin Hwang; Dimitri Niks; Russ Hille; Tom Wydrzynski; Robert L Burnap; Warwick Hillier; Richard J Debus
Journal:  Biochemistry       Date:  2010-12-08       Impact factor: 3.162

6.  Ligation of D1-His332 and D1-Asp170 to the manganese cluster of photosystem II from Synechocystis assessed by multifrequency pulse EPR spectroscopy.

Authors:  Troy A Stich; Gregory J Yeagle; Rachel J Service; Richard J Debus; R David Britt
Journal:  Biochemistry       Date:  2011-08-08       Impact factor: 3.162

7.  Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing Mn4CaO5 cluster in photosystem II.

Authors:  Shin Nakamura; Takumi Noguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

8.  Crystallization of Photosystem II for Time-Resolved Structural Studies Using an X-ray Free Electron Laser.

Authors:  Jesse Coe; Christopher Kupitz; Shibom Basu; Chelsie E Conrad; Shatabdi Roy-Chowdhury; Raimund Fromme; Petra Fromme
Journal:  Methods Enzymol       Date:  2015-04-18       Impact factor: 1.600

9.  Substitution of the D1-Asn87 site in photosystem II of cyanobacteria mimics the chloride-binding characteristics of spinach photosystem II.

Authors:  Gourab Banerjee; Ipsita Ghosh; Christopher J Kim; Richard J Debus; Gary W Brudvig
Journal:  J Biol Chem       Date:  2017-12-20       Impact factor: 5.157

Review 10.  Proton transport facilitating water-oxidation: the role of second sphere ligands surrounding the catalytic metal cluster.

Authors:  Han Bao; Preston L Dilbeck; Robert L Burnap
Journal:  Photosynth Res       Date:  2013-08-24       Impact factor: 3.573

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