Literature DB >> 32434915

Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism.

Mohamed Ibrahim1, Thomas Fransson2, Ruchira Chatterjee3, Mun Hon Cheah4, Rana Hussein1, Louise Lassalle3, Kyle D Sutherlin3, Iris D Young3, Franklin D Fuller5, Sheraz Gul3, In-Sik Kim3, Philipp S Simon3, Casper de Lichtenberg4,6, Petko Chernev4, Isabel Bogacz3, Cindy C Pham3, Allen M Orville7,8, Nicholas Saichek9, Trent Northen9, Alexander Batyuk5, Sergio Carbajo5, Roberto Alonso-Mori5, Kensuke Tono10,11, Shigeki Owada9,10, Asmit Bhowmick3, Robert Bolotovsky3, Derek Mendez3, Nigel W Moriarty3, James M Holton3,12,13, Holger Dobbek1, Aaron S Brewster3, Paul D Adams3,14, Nicholas K Sauter3, Uwe Bergmann15, Athina Zouni16, Johannes Messinger17,6, Jan Kern3, Vittal K Yachandra18, Junko Yano18.   

Abstract

In oxygenic photosynthesis, light-driven oxidation of water to molecular oxygen is carried out by the oxygen-evolving complex (OEC) in photosystem II (PS II). Recently, we reported the room-temperature structures of PS II in the four (semi)stable S-states, S1, S2, S3, and S0, showing that a water molecule is inserted during the S2 → S3 transition, as a new bridging O(H)-ligand between Mn1 and Ca. To understand the sequence of events leading to the formation of this last stable intermediate state before O2 formation, we recorded diffraction and Mn X-ray emission spectroscopy (XES) data at several time points during the S2 → S3 transition. At the electron acceptor site, changes due to the two-electron redox chemistry at the quinones, QA and QB, are observed. At the donor site, tyrosine YZ and His190 H-bonded to it move by 50 µs after the second flash, and Glu189 moves away from Ca. This is followed by Mn1 and Mn4 moving apart, and the insertion of OX(H) at the open coordination site of Mn1. This water, possibly a ligand of Ca, could be supplied via a "water wheel"-like arrangement of five waters next to the OEC that is connected by a large channel to the bulk solvent. XES spectra show that Mn oxidation (τ of ∼350 µs) during the S2 → S3 transition mirrors the appearance of OX electron density. This indicates that the oxidation state change and the insertion of water as a bridging atom between Mn1 and Ca are highly correlated.
Copyright © 2020 the Author(s). Published by PNAS.

Entities:  

Keywords:  X-ray free electron laser; oxygen-evolving complex; photosynthesis; photosystem II; water oxidation

Mesh:

Substances:

Year:  2020        PMID: 32434915      PMCID: PMC7293653          DOI: 10.1073/pnas.2000529117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  65 in total

1.  Exploring the energetics of water permeation in photosystem II by multiple steered molecular dynamics simulations.

Authors:  Sergey Vassiliev; Tatiana Zaraiskaya; Doug Bruce
Journal:  Biochim Biophys Acta       Date:  2012-06-06

2.  Reaction kinetics for positive charge accumulation on the water side of chloroplast photosystem II.

Authors:  G T Babcock; R E Blankenship; K Sauer
Journal:  FEBS Lett       Date:  1976-01-15       Impact factor: 4.124

3.  Herbicide binding and thermal stability of photosystem II isolated from Thermosynechococcus elongatus.

Authors:  K Zimmermann; M Heck; J Frank; J Kern; I Vass; A Zouni
Journal:  Biochim Biophys Acta       Date:  2005-12-29

4.  Monitoring water reactions during the S-state cycle of the photosynthetic water-oxidizing center: detection of the DOD bending vibrations by means of Fourier transform infrared spectroscopy.

Authors:  Hiroyuki Suzuki; Miwa Sugiura; Takumi Noguchi
Journal:  Biochemistry       Date:  2008-09-27       Impact factor: 3.162

5.  Theoretical and computational investigations of geometrical, electronic and spin structures of the CaMn4 OX (X = 5, 6) cluster in the Kok cycle Si (i = 0-3) of oxygen evolving complex of photosystem II.

Authors:  Kizashi Yamaguchi; Shusuke Yamanaka; Hiroshi Isobe; Mitsuo Shoji; Kouichi Miyagawa; Takahito Nakajima; Takashi Kawakami; Mitsutaka Okumura
Journal:  Physiol Plant       Date:  2019-04-04       Impact factor: 4.500

6.  O-O bond formation in the S(4) state of the oxygen-evolving complex in photosystem II.

Authors:  Per E M Siegbahn
Journal:  Chemistry       Date:  2006-12-13       Impact factor: 5.236

7.  Function of tyrosine Z in water oxidation by photosystem II: electrostatical promotor instead of hydrogen abstractor.

Authors:  R Ahlbrink; M Haumann; D Cherepanov; O Bögershausen; A Mulkidjanian; W Junge
Journal:  Biochemistry       Date:  1998-01-27       Impact factor: 3.162

8.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

9.  Mechanism of Water Delivery to the Active Site of Photosystem II along the S(2) to S(3) Transition.

Authors:  Matteo Capone; Daniele Narzi; Daniele Bovi; Leonardo Guidoni
Journal:  J Phys Chem Lett       Date:  2016-01-26       Impact factor: 6.475

10.  Energetics of proton release on the first oxidation step in the water-oxidizing enzyme.

Authors:  Keisuke Saito; A William Rutherford; Hiroshi Ishikita
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

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  27 in total

1.  High-Resolution XFEL Structure of the Soluble Methane Monooxygenase Hydroxylase Complex with its Regulatory Component at Ambient Temperature in Two Oxidation States.

Authors:  Vivek Srinivas; Rahul Banerjee; Hugo Lebrette; Jason C Jones; Oskar Aurelius; In-Sik Kim; Cindy C Pham; Sheraz Gul; Kyle D Sutherlin; Asmit Bhowmick; Juliane John; Esra Bozkurt; Thomas Fransson; Pierre Aller; Agata Butryn; Isabel Bogacz; Philipp Simon; Stephen Keable; Alexander Britz; Kensuke Tono; Kyung Sook Kim; Sang-Youn Park; Sang Jae Lee; Jaehyun Park; Roberto Alonso-Mori; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Uwe Bergmann; Nicholas K Sauter; Allen M Orville; Vittal K Yachandra; Junko Yano; John D Lipscomb; Jan Kern; Martin Högbom
Journal:  J Am Chem Soc       Date:  2020-08-05       Impact factor: 15.419

2.  Proton-controlled Action of an Imidazole as Electron Relay in a Photoredox Triad.

Authors:  Philipp Gotico; Christian Herrero; Stefano Protti; Annamaria Quaranta; Sujitraj Sheth; Reza Fallahpour; Rajaa Farran; Zakaria Halime; Marie Sircoglou; Ally Aukauloo; Winfried Leibl
Journal:  Photochem Photobiol Sci       Date:  2022-01-05       Impact factor: 3.982

3.  Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning.

Authors:  Muhamed Amin
Journal:  Photosynth Res       Date:  2022-07-27       Impact factor: 3.429

4.  Combination of an inject-and-transfer system for serial femtosecond crystallography.

Authors:  Keondo Lee; Jihan Kim; Sangwon Baek; Jaehyun Park; Sehan Park; Jong-Lam Lee; Wan Kyun Chung; Yunje Cho; Ki Hyun Nam
Journal:  J Appl Crystallogr       Date:  2022-07-05       Impact factor: 4.868

Review 5.  Binding and functions of the two chloride ions in the oxygen-evolving center of photosystem II.

Authors:  Ko Imaizumi; Kentaro Ifuku
Journal:  Photosynth Res       Date:  2022-06-13       Impact factor: 3.429

6.  An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Authors:  Agata Butryn; Philipp S Simon; Pierre Aller; Philip Hinchliffe; Ramzi N Massad; Gabriel Leen; Catherine L Tooke; Isabel Bogacz; In-Sik Kim; Asmit Bhowmick; Aaron S Brewster; Nicholas E Devenish; Jürgen Brem; Jos J A G Kamps; Pauline A Lang; Patrick Rabe; Danny Axford; John H Beale; Bradley Davy; Ali Ebrahim; Julien Orlans; Selina L S Storm; Tiankun Zhou; Shigeki Owada; Rie Tanaka; Kensuke Tono; Gwyndaf Evans; Robin L Owen; Frances A Houle; Nicholas K Sauter; Christopher J Schofield; James Spencer; Vittal K Yachandra; Junko Yano; Jan F Kern; Allen M Orville
Journal:  Nat Commun       Date:  2021-07-22       Impact factor: 14.919

7.  Do crystallographic XFEL data support binding of a water molecule to the oxygen-evolving complex of photosystem II exposed to two flashes of light?

Authors:  Jimin Wang; William H Armstrong; Victor S Batista
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

8.  Reply to Wang et al.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map.

Authors:  Mohamed Ibrahim; Nigel W Moriarty; Jan Kern; James M Holton; Aaron S Brewster; Asmit Bhowmick; Uwe Bergmann; Athina Zouni; Johannes Messinger; Vittal K Yachandra; Junko Yano; Holger Dobbek; Nicholas K Sauter; Paul D Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

Review 9.  Moving beyond static snapshots: Protein dynamics and the Protein Data Bank.

Authors:  Mitchell D Miller; George N Phillips
Journal:  J Biol Chem       Date:  2021-05-04       Impact factor: 5.157

10.  Glycerol binding at the narrow channel of photosystem II stabilizes the low-spin S2 state of the oxygen-evolving complex.

Authors:  David A Flesher; Jinchan Liu; Jessica M Wiwczar; Krystle Reiss; Ke R Yang; Jimin Wang; Mikhail Askerka; Christopher J Gisriel; Victor S Batista; Gary W Brudvig
Journal:  Photosynth Res       Date:  2022-03-23       Impact factor: 3.429

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