Literature DB >> 21367867

Structural basis of cyanobacterial photosystem II Inhibition by the herbicide terbutryn.

Matthias Broser1, Carina Glöckner, Azat Gabdulkhakov, Albert Guskov, Joachim Buchta, Jan Kern, Frank Müh, Holger Dau, Wolfram Saenger, Athina Zouni.   

Abstract

Herbicides that target photosystem II (PSII) compete with the native electron acceptor plastoquinone for binding at the Q(B) site in the D1 subunit and thus block the electron transfer from Q(A) to Q(B). Here, we present the first crystal structure of PSII with a bound herbicide at a resolution of 3.2 Å. The crystallized PSII core complexes were isolated from the thermophilic cyanobacterium Thermosynechococcus elongatus. The used herbicide terbutryn is found to bind via at least two hydrogen bonds to the Q(B) site similar to photosynthetic reaction centers in anoxygenic purple bacteria. Herbicide binding to PSII is also discussed regarding the influence on the redox potential of Q(A), which is known to affect photoinhibition. We further identified a second and novel chloride position close to the water-oxidizing complex and in the vicinity of the chloride ion reported earlier (Guskov, A., Kern, J., Gabdulkhakov, A., Broser, M., Zouni, A., and Saenger, W. (2009) Nat. Struct. Mol. Biol. 16, 334-342). This discovery is discussed in the context of proton transfer to the lumen.

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Year:  2011        PMID: 21367867      PMCID: PMC3091205          DOI: 10.1074/jbc.M110.215970

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

1.  Structural basis of the drastically increased initial electron transfer rate in the reaction center from a Rhodopseudomonas viridis mutant described at 2.00-A resolution.

Authors:  C R Lancaster; M V Bibikova; P Sabatino; D Oesterhelt; H Michel
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

2.  Energetics of primary and secondary electron transfer in Photosystem II membrane particles of spinach revisited on basis of recombination-fluorescence measurements.

Authors:  Markus Grabolle; Holger Dau
Journal:  Biochim Biophys Acta       Date:  2005-04-02

Review 3.  Oxidative photosynthetic water splitting: energetics, kinetics and mechanism.

Authors:  Gernot Renger
Journal:  Photosynth Res       Date:  2007-07-24       Impact factor: 3.573

4.  Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms.

Authors:  V Sobolev; M Edelman
Journal:  Proteins       Date:  1995-03

5.  Molecular analysis of psbA mutations responsible for various herbicide resistance phenotypes in Synechocystis 6714.

Authors:  G Ajlani; D Kirilovsky; M Picaud; C Astier
Journal:  Plant Mol Biol       Date:  1989-11       Impact factor: 4.076

6.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

7.  Spare quinones in the QB cavity of crystallized photosystem II from Thermosynechococcus elongatus.

Authors:  Roland Krivanek; Jan Kern; Athina Zouni; Holger Dau; Michael Haumann
Journal:  Biochim Biophys Acta       Date:  2007-02-24

8.  Energetics of a possible proton exit pathway for water oxidation in photosystem II.

Authors:  Hiroshi Ishikita; Wolfram Saenger; Bernhard Loll; Jacek Biesiadka; Ernst-Walter Knapp
Journal:  Biochemistry       Date:  2006-02-21       Impact factor: 3.162

9.  Pigment-protein interactions in the photosynthetic reaction centre from Rhodopseudomonas viridis.

Authors:  H Michel; O Epp; J Deisenhofer
Journal:  EMBO J       Date:  1986-10       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  19 in total

1.  Triazine Probes Target Ascorbate Peroxidases in Plants.

Authors:  Kyoko Morimoto; Kyle S Cole; Jiorgos Kourelis; Collin H Witt; Daniel Brown; Daniel Krahn; Monika Stegmann; Farnusch Kaschani; Markus Kaiser; Jonathan Burton; Shabaz Mohammed; Kazuko Yamaguchi-Shinozaki; Eranthie Weerapana; Renier A L van der Hoorn
Journal:  Plant Physiol       Date:  2019-05-28       Impact factor: 8.340

Review 2.  Evolution of protein specificity: insights from ancestral protein reconstruction.

Authors:  Mohammad A Siddiq; Georg Ka Hochberg; Joseph W Thornton
Journal:  Curr Opin Struct Biol       Date:  2017-08-23       Impact factor: 6.809

3.  Combined molecular docking and QSAR study of fused heterocyclic herbicide inhibitors of D1 protein in photosystem II of plants.

Authors:  Simona Funar-Timofei; Ana Borota; Luminita Crisan
Journal:  Mol Divers       Date:  2017-03-16       Impact factor: 2.943

Review 4.  The nonheme iron in photosystem II.

Authors:  Frank Müh; Athina Zouni
Journal:  Photosynth Res       Date:  2013-10       Impact factor: 3.573

5.  6-Ethoxy-4- N-(2-morpholin-4-ylethyl) -2-N-propan-2-yl-1,3, 5-triazine-2, 4-diamine endows herbicidal activity against Phalaris minor a weed of wheat crop field: An in -silico and experimental approaches of herbicide discovery.

Authors:  Nandan Kumar; Priyanka Rani; Shikha Agarwal; Durg Vijay Singh
Journal:  J Mol Model       Date:  2022-03-04       Impact factor: 1.810

Review 6.  Causes of molecular convergence and parallelism in protein evolution.

Authors:  Jay F Storz
Journal:  Nat Rev Genet       Date:  2016-03-14       Impact factor: 53.242

Review 7.  Evolutionary biochemistry: revealing the historical and physical causes of protein properties.

Authors:  Michael J Harms; Joseph W Thornton
Journal:  Nat Rev Genet       Date:  2013-08       Impact factor: 53.242

8.  The study of conformational changes in photosystem II during a charge separation.

Authors:  Natalia Kulik; Michal Kutý; David Řeha
Journal:  J Mol Model       Date:  2020-03-09       Impact factor: 1.810

9.  Anilofos tolerance and its mineralization by the cyanobacterium Synechocystis sp. strain PUPCCC 64.

Authors:  D P Singh; J I S Khattar; Mandeep Kaur; Gurdeep Kaur; Meenu Gupta; Yadvinder Singh
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

10.  A powerful molecular engineering tool provided efficient Chlamydomonas mutants as bio-sensing elements for herbicides detection.

Authors:  Maya D Lambreva; Maria Teresa Giardi; Irene Rambaldi; Amina Antonacci; Sandro Pastorelli; Ivo Bertalan; Ivan Husu; Udo Johanningmeier; Giuseppina Rea
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

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