Literature DB >> 19727929

What genomic sequence information has revealed about Vibrio ecology in the ocean--a review.

Darrell Jay Grimes1, Crystal N Johnson, Kevin S Dillon, Adrienne R Flowers, Nicholas F Noriea, Tracy Berutti.   

Abstract

To date, the genomes of eight Vibrio strains representing six species and three human pathogens have been fully sequenced and reported. This review compares genomic information revealed from these sequencing efforts and what we can infer about Vibrio biology and ecology from this and related genomic information. The focus of the review is on those attributes that allow the Vibrios to survive and even proliferate in their ocean habitats, which include seawater, plankton, invertebrates, fish, marine mammals, plants, man-made structures (surfaces), and particulate matter. Areas covered include general information about the eight genomes, each of which is distributed over two chromosomes; a discussion of expected and unusual genes found; attachment sites and mechanisms; utilization of particulate and dissolved organic matter; and conclusions.

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Year:  2009        PMID: 19727929     DOI: 10.1007/s00248-009-9578-9

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  95 in total

1.  Microbial community gene expression in ocean surface waters.

Authors:  Jorge Frias-Lopez; Yanmei Shi; Gene W Tyson; Maureen L Coleman; Stephan C Schuster; Sallie W Chisholm; Edward F Delong
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-03       Impact factor: 11.205

2.  Long-term persistence of toxigenic Vibrio cholerae 01 in the mucilaginous sheath of a blue-green alga, Anabaena variabilis.

Authors:  M S Islam; B S Drasar; D J Bradley
Journal:  J Trop Med Hyg       Date:  1990-04

3.  Survival of Kanagawa-positive strains of Vibrio parahaemolyticus in a brackish-water area.

Authors:  N H Kumazawa; E Kato
Journal:  J Hyg (Lond)       Date:  1985-10

4.  Attachment of Vibrio cholerae serogroup O1 to zooplankton and phytoplankton of Bangladesh waters.

Authors:  M L Tamplin; A L Gauzens; A Huq; D A Sack; R R Colwell
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

5.  Salinity-induced survival strategy of Vibrio cholerae associated with copepods in Cochin backwaters.

Authors:  K U Thomas; N Joseph; O Raveendran; Shanta Nair
Journal:  Mar Pollut Bull       Date:  2006-04-28       Impact factor: 5.553

Review 6.  Pathogenicity islands and the evolution of microbes.

Authors:  J Hacker; J B Kaper
Journal:  Annu Rev Microbiol       Date:  2000       Impact factor: 15.500

7.  Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners.

Authors:  E G Ruby; M Urbanowski; J Campbell; A Dunn; M Faini; R Gunsalus; P Lostroh; C Lupp; J McCann; D Millikan; A Schaefer; E Stabb; A Stevens; K Visick; C Whistler; E P Greenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-09       Impact factor: 11.205

8.  Acute dehydrating disease caused by Vibrio cholerae serogroups O1 and O139 induce increases in innate cells and inflammatory mediators at the mucosal surface of the gut.

Authors:  F Qadri; T R Bhuiyan; K K Dutta; R Raqib; M S Alam; N H Alam; A-M Svennerholm; M M Mathan
Journal:  Gut       Date:  2004-01       Impact factor: 23.059

9.  Genetic evidence that the Vibrio cholerae monolayer is a distinct stage in biofilm development.

Authors:  Sudha Moorthy; Paula I Watnick
Journal:  Mol Microbiol       Date:  2004-04       Impact factor: 3.501

Review 10.  Activation and suppression of the proinflammatory immune response by Vibrio cholerae toxins.

Authors:  Karla J Fullner Satchell
Journal:  Microbes Infect       Date:  2003-11       Impact factor: 2.700

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  28 in total

1.  Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea.

Authors:  Yan Li; Min Wang; Qian Liu; Xue Song; Duobing Wang; Yu Ma; Hongbing Shao; Yong Jiang
Journal:  Curr Microbiol       Date:  2016-02-08       Impact factor: 2.188

2.  Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China.

Authors:  Yundan Liu; Lei Zhao; Min Wang; Qi Wang; Xinran Zhang; Yuye Han; Meiwen Wang; Tong Jiang; Hongbing Shao; Yong Jiang; Andrew McMinn
Journal:  Virus Genes       Date:  2019-08-16       Impact factor: 2.332

3.  Genome Analysis of Two Novel Lytic Vibrio maritimus Phages Isolated from the Coastal Surface Seawater of Qingdao, China.

Authors:  Yuye Han; Min Wang; Qian Liu; Yundan Liu; Qi Wang; Xueping Duan; Lu Liu; Yong Jiang; Hongbing Shao; Cui Guo
Journal:  Curr Microbiol       Date:  2019-07-13       Impact factor: 2.188

4.  Genomic and metabolic profiling of nonulosonic acids in Vibrionaceae reveal biochemical phenotypes of allelic divergence in Vibrio vulnificus.

Authors:  Amanda L Lewis; Jean-Bernard Lubin; Shilpa Argade; Natasha Naidu; Biswa Choudhury; E Fidelma Boyd
Journal:  Appl Environ Microbiol       Date:  2011-07-01       Impact factor: 4.792

5.  Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill.

Authors:  Joel E Kostka; Om Prakash; Will A Overholt; Stefan J Green; Gina Freyer; Andy Canion; Jonathan Delgardio; Nikita Norton; Terry C Hazen; Markus Huettel
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

6.  Corexit 9500 Enhances Oil Biodegradation and Changes Active Bacterial Community Structure of Oil-Enriched Microcosms.

Authors:  Stephen M Techtmann; Mobing Zhuang; Pablo Campo; Edith Holder; Michael Elk; Terry C Hazen; Robyn Conmy; Jorge W Santo Domingo
Journal:  Appl Environ Microbiol       Date:  2017-05-01       Impact factor: 4.792

7.  Dynamics of Vibrio with virulence genes detected in Pacific harbor seals (Phoca vitulina richardii) off California: implications for marine mammal health.

Authors:  Stephanie N Hughes; Denise J Greig; Woutrina A Miller; Barbara A Byrne; Frances M D Gulland; James T Harvey
Journal:  Microb Ecol       Date:  2013-02-08       Impact factor: 4.552

8.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the coastal and estuarine waters of Louisiana, Maryland, Mississippi, and Washington (United States).

Authors:  Crystal N Johnson; John C Bowers; Kimberly J Griffitt; Vanessa Molina; Rachel W Clostio; Shaofeng Pei; Edward Laws; Rohinee N Paranjpye; Mark S Strom; Arlene Chen; Nur A Hasan; Anwar Huq; Nicholas F Noriea; D Jay Grimes; Rita R Colwell
Journal:  Appl Environ Microbiol       Date:  2012-08-03       Impact factor: 4.792

Review 9.  Fitness factors in vibrios: a mini-review.

Authors:  Crystal N Johnson
Journal:  Microb Ecol       Date:  2013-01-10       Impact factor: 4.552

10.  Streamlining and core genome conservation among highly divergent members of the SAR11 clade.

Authors:  Jana Grote; J Cameron Thrash; Megan J Huggett; Zachary C Landry; Paul Carini; Stephen J Giovannoni; Michael S Rappé
Journal:  MBio       Date:  2012-09-18       Impact factor: 7.867

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