Literature DB >> 31420829

Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China.

Yundan Liu1, Lei Zhao2, Min Wang3,4,5, Qi Wang1, Xinran Zhang1, Yuye Han1, Meiwen Wang1, Tong Jiang1, Hongbing Shao1,6, Yong Jiang1,6,7, Andrew McMinn8.   

Abstract

A novel Vibrio phage, P23, belonging to the family Siphoviridae was isolated from the surface water of the Yellow Sea, China. The complete genome of this phage was determined. A one-step growth curve showed that the latent period was approximately 30 min, the burst size was 24 PFU/cell, and the rise period was 20 min. The phage is host specific and is stable over a range of pH (5-10) and temperatures (4-65 °C). Transmission electron microscopy showed that phage P23 can be categorized into the Siphoviridae family, with an icosahedral head of 60 nm and a long noncontractile tail of 144 nm. The genome consisted of a linear, double-stranded 40.063 kb DNA molecule with 42.5% G+C content and 72 putative open reading frames (ORFs) without tRNA. The predicted ORFs were classified into six functional groups, including DNA replication, regulation and nucleotide metabolism, transcription, phage packaging, phage structure, lysis, and hypothetical proteins. The Vibrio phage P23 genome is a new marine Siphoviridae-family phage genome that provides basic information for further molecular research on interaction mechanisms between bacteriophages and their hosts.

Entities:  

Keywords:  Bacteriophage; Complete genome; Siphoviridae; Vibrio

Mesh:

Year:  2019        PMID: 31420829     DOI: 10.1007/s11262-019-01699-3

Source DB:  PubMed          Journal:  Virus Genes        ISSN: 0920-8569            Impact factor:   2.332


  34 in total

1.  Structure of a bifunctional DNA primase-polymerase.

Authors:  Georg Lipps; Andreas O Weinzierl; Gudrun von Scheven; Claudia Buchen; Patrick Cramer
Journal:  Nat Struct Mol Biol       Date:  2004-01-18       Impact factor: 15.369

2.  Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea.

Authors:  Yan Li; Min Wang; Qian Liu; Xue Song; Duobing Wang; Yu Ma; Hongbing Shao; Yong Jiang
Journal:  Curr Microbiol       Date:  2016-02-08       Impact factor: 2.188

3.  Complete genome sequence of bacteriophage P2559Y, a marine phage that infects Croceibacter atlanticus HTCC2559.

Authors:  Ilnam Kang; Dongmin Kang; Jang-Cheon Cho
Journal:  Mar Genomics       Date:  2016-07-07       Impact factor: 1.710

4.  Isolation and identification of Vibrio cholerae and Vibrio parahaemolyticus from prawn (Penaeus monodon) seafood: Preservation strategies.

Authors:  P R Yaashikaa; A Saravanan; P Senthil Kumar
Journal:  Microb Pathog       Date:  2016-07-22       Impact factor: 3.738

5.  Identification of a bifunctional primase-polymerase domain of corynephage BFK20 replication protein gp43.

Authors:  Nora Halgasova; Irena Mesarosova; Gabriela Bukovska
Journal:  Virus Res       Date:  2011-11-15       Impact factor: 3.303

6.  Genomic analysis of cold-active Colwelliaphage 9A and psychrophilic phage-host interactions.

Authors:  Jesse R Colangelo-Lillis; Jody W Deming
Journal:  Extremophiles       Date:  2012-12-07       Impact factor: 2.395

7.  Bioinformatic analysis of the Acinetobacter baumannii phage AB1 genome.

Authors:  Peizhen Li; Biaobang Chen; Zhijian Song; Yulong Song; Yanmei Yang; Ping Ma; Huifeng Wang; Jun Ying; Ping Ren; Lei Yang; Guohui Gao; Shouguang Jin; Qiyu Bao; Hongjiang Yang
Journal:  Gene       Date:  2012-07-31       Impact factor: 3.688

8.  Isolation and characterisation of KP34--a novel φKMV-like bacteriophage for Klebsiella pneumoniae.

Authors:  Zuzanna Drulis-Kawa; Paweł Mackiewicz; Agata Kęsik-Szeloch; Ewa Maciaszczyk-Dziubinska; Beata Weber-Dąbrowska; Agata Dorotkiewicz-Jach; Daria Augustyniak; Grażyna Majkowska-Skrobek; Tomasz Bocer; Joanna Empel; Andrew M Kropinski
Journal:  Appl Microbiol Biotechnol       Date:  2011-02-16       Impact factor: 4.813

9.  The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

Authors:  Douglas B Rusch; Aaron L Halpern; Granger Sutton; Karla B Heidelberg; Shannon Williamson; Shibu Yooseph; Dongying Wu; Jonathan A Eisen; Jeff M Hoffman; Karin Remington; Karen Beeson; Bao Tran; Hamilton Smith; Holly Baden-Tillson; Clare Stewart; Joyce Thorpe; Jason Freeman; Cynthia Andrews-Pfannkoch; Joseph E Venter; Kelvin Li; Saul Kravitz; John F Heidelberg; Terry Utterback; Yu-Hui Rogers; Luisa I Falcón; Valeria Souza; Germán Bonilla-Rosso; Luis E Eguiarte; David M Karl; Shubha Sathyendranath; Trevor Platt; Eldredge Bermingham; Victor Gallardo; Giselle Tamayo-Castillo; Michael R Ferrari; Robert L Strausberg; Kenneth Nealson; Robert Friedman; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

10.  Isolation and characterization of a bacteriophage phiEap-2 infecting multidrug resistant Enterobacter aerogenes.

Authors:  Erna Li; Xiao Wei; Yanyan Ma; Zhe Yin; Huan Li; Weishi Lin; Xuesong Wang; Chao Li; Zhiqiang Shen; Ruixiang Zhao; Huiying Yang; Aimin Jiang; Wenhui Yang; Jing Yuan; Xiangna Zhao
Journal:  Sci Rep       Date:  2016-06-20       Impact factor: 4.379

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  3 in total

1.  Characterization and Genomic Analysis of the First Podophage Infecting Shewanella, Representing a Novel Viral Cluster.

Authors:  Yue Dong; Kaiyang Zheng; Xiao Zou; Yantao Liang; Yundan Liu; Xiang Li; Hongbing Shao; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Andrew McMinn; Min Wang
Journal:  Front Microbiol       Date:  2022-04-01       Impact factor: 6.064

2.  Novel findings in context of molecular diversity and abundance of bacteriophages in wastewater environments of Riyadh, Saudi Arabia.

Authors:  Fahad Alanazi; Islam Nour; Atif Hanif; Ibrahim Al-Ashkar; Reem M Aljowaie; Saleh Eifan
Journal:  PLoS One       Date:  2022-08-18       Impact factor: 3.752

3.  Isolation and Characterization of a Newly Discovered Phage, V-YDF132, for Lysing Vibrio harveyi.

Authors:  Shaozhu Kang; Luhao Zhang; Jiaming Liao; Dongzhuo Zhang; Siting Wu; Xin Zhang; Qiwei Qin; Jingguang Wei
Journal:  Viruses       Date:  2022-08-17       Impact factor: 5.818

  3 in total

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