Literature DB >> 19706896

Characterizing hydrophobicity of interfaces by using cavity formation, solute binding, and water correlations.

Rahul Godawat1, Sumanth N Jamadagni, Shekhar Garde.   

Abstract

Hydrophobicity is often characterized macroscopically by the droplet contact angle. Molecular signatures of hydrophobicity have, however, remained elusive. Successful theories predict a drying transition leading to a vapor-like region near large hard-sphere solutes and interfaces. Adding attractions wets the interface with local density increasing with attractions. Here we present extensive molecular simulation studies of hydration of realistic surfaces with a wide range of chemistries from hydrophobic (-CF(3), -CH(3)) to hydrophilic (-OH, -CONH(2)). We show that the water density near weakly attractive hydrophobic surfaces (e.g., -CF(3)) can be bulk-like or larger, and provides a poor quantification of surface hydrophobicity. In contrast, the probability of cavity formation or the free energy of binding of hydrophobic solutes to interfaces correlates quantitatively with the macroscopic wetting properties and serves as an excellent signature of hydrophobicity. Specifically, the probability of cavity formation is enhanced in the vicinity of hydrophobic surfaces, and water-water correlations correspondingly display characteristics similar to those near a vapor-liquid interface. Hydrophilic surfaces suppress cavity formation and reduce the water-water correlation length. Our results suggest a potentially robust approach for characterizing hydrophobicity of more complex and heterogeneous surfaces of proteins and biomolecules, and other nanoscopic objects.

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Year:  2009        PMID: 19706896      PMCID: PMC2741215          DOI: 10.1073/pnas.0902778106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Hydrophobicity maps of the N-peptide coiled coil of HIV-1 gp41.

Authors:  Xavier Siebert; Gerhard Hummer
Journal:  Biochemistry       Date:  2002-03-05       Impact factor: 3.162

2.  High-resolution in situ x-ray study of the hydrophobic gap at the water-octadecyl-trichlorosilane interface.

Authors:  Markus Mezger; Harald Reichert; Sebastian Schöder; John Okasinski; Heiko Schröder; Helmut Dosch; Dennis Palms; John Ralston; Veijo Honkimäki
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

3.  Global thermodynamics of hydrophobic cavitation, dewetting, and hydration.

Authors:  Dor Ben-Amotz
Journal:  J Chem Phys       Date:  2005-11-08       Impact factor: 3.488

4.  Effect of pressure on the phase behavior and structure of water confined between nanoscale hydrophobic and hydrophilic plates.

Authors:  Nicolas Giovambattista; Peter J Rossky; Pablo G Debenedetti
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-13

5.  Hydrophobicity at a Janus interface.

Authors:  Xueyan Zhang; Yingxi Zhu; Steve Granick
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

6.  Quantifying water density fluctuations and compressibility of hydration shells of hydrophobic solutes and proteins.

Authors:  Sapna Sarupria; Shekhar Garde
Journal:  Phys Rev Lett       Date:  2009-07-17       Impact factor: 9.161

7.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

8.  No intrinsic depletion layer on a polystyrene thin film at a water interface.

Authors:  Young-Soo Seo; Sushil Satija
Journal:  Langmuir       Date:  2006-08-15       Impact factor: 3.882

9.  Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water.

Authors:  Manoj V Athawale; Gaurav Goel; Tuhin Ghosh; Thomas M Truskett; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

10.  Hydrophobic collapse in multidomain protein folding.

Authors:  Ruhong Zhou; Xuhui Huang; Claudio J Margulis; Bruce J Berne
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

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  47 in total

1.  A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Authors:  Nadya Kobko; Mateusz Marianski; Amparo Asensio; Robert Wieczorek; J J Dannenberg
Journal:  Comput Theor Chem       Date:  2011-11-22       Impact factor: 1.926

2.  Arginine mutations in antibody complementarity-determining regions display context-dependent affinity/specificity trade-offs.

Authors:  Kathryn E Tiller; Lijuan Li; Sandeep Kumar; Mark C Julian; Shekhar Garde; Peter M Tessier
Journal:  J Biol Chem       Date:  2017-08-04       Impact factor: 5.157

3.  Extended surfaces modulate hydrophobic interactions of neighboring solutes.

Authors:  Amish J Patel; Patrick Varilly; Sumanth N Jamadagni; Hari Acharya; Shekhar Garde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

4.  Unraveling the hydrophobic effect, one molecule at a time.

Authors:  Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-28       Impact factor: 11.205

5.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Role of electrostatics in modulating hydrophobic interactions and barriers to hydrophobic assembly.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-06-24       Impact factor: 2.991

7.  Molecular origins of fluorocarbon hydrophobicity.

Authors:  Vishwanath H Dalvi; Peter J Rossky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

8.  Molecular dynamics analysis of conserved hydrophobic and hydrophilic bond-interaction networks in ErbB family kinases.

Authors:  Andrew J Shih; Shannon E Telesco; Sung-Hee Choi; Mark A Lemmon; Ravi Radhakrishnan
Journal:  Biochem J       Date:  2011-06-01       Impact factor: 3.857

9.  Instantaneous liquid interfaces.

Authors:  Adam P Willard; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-11       Impact factor: 2.991

10.  Fluctuations of water near extended hydrophobic and hydrophilic surfaces.

Authors:  Amish J Patel; Patrick Varilly; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-04       Impact factor: 2.991

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