Literature DB >> 20509706

Role of electrostatics in modulating hydrophobic interactions and barriers to hydrophobic assembly.

Brad A Bauer1, Sandeep Patel.   

Abstract

Hydrophobic effects continue to be an active area of research due to implications for a wide range of physicochemical phenomena. Molecular dynamics simulations have been used extensively in the study of such effects using various water potential models, with few studies addressing the differences between models. In particular, studies considering the explicit treatment of water polarizability are underrepresented in the literature. We present results from molecular dynamics simulations that systematically compare the dependence of large-scale hydrophobic effects on the water model. We consider three common nonpolarizable models (SPC/E, TIP3P, and TIP4P) and two common polarizable models (TIP4P-FQ and SWM4-NDP). Results highlight the similarities and differences of the different water models in the vicinity of two large hydrophobic plates. In particular, profiles of average density, density fluctuations, orientation, and hydrogen bonding show only minor differences among the water models studied. However, the potential of mean force for the hydrophobe dimerization is significantly reduced in the polarizable water systems. TIP4P-FQ shows the deepest minimum of approximately -54(+/-3) kcal/mol compared to -40(+/-3), -40(+/-2), -42(+/-3), and -45(+/-5) kcal/mol for TIP4P, TIP3P, SPC/E, and SWM4-NDP (all relative to the dissociated state). We discuss the relationship between hydrophobic association and the strength of water-water interactions in the liquid phase. Results suggest that models treating polarizability (both implicitly and explicitly) influence a stronger driving force toward hydrophobic assembly. Implications of these results, as well as prospectives on future work, are discussed.

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Year:  2010        PMID: 20509706      PMCID: PMC2916683          DOI: 10.1021/jp101995d

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  57 in total

1.  Temperature and length scale dependence of hydrophobic effects and their possible implications for protein folding.

Authors:  D M Huang; D Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  Ion solvation thermodynamics from simulation with a polarizable force field.

Authors:  Alan Grossfield; Pengyu Ren; Jay W Ponder
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

3.  Thermodynamics, structure, and dynamics of water confined between hydrophobic plates.

Authors:  Pradeep Kumar; Sergey V Buldyrev; Francis W Starr; Nicolas Giovambattista; H Eugene Stanley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-11-11

4.  Structure of water nanoconfined between hydrophobic surfaces.

Authors:  M C Gordillo; G Nagy; J Martí
Journal:  J Chem Phys       Date:  2005-08-01       Impact factor: 3.488

5.  Effect of pressure on the phase behavior and structure of water confined between nanoscale hydrophobic and hydrophilic plates.

Authors:  Nicolas Giovambattista; Peter J Rossky; Pablo G Debenedetti
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-13

6.  Structure and dynamics of the aqueous liquid-vapor interface: a comprehensive particle-based simulation study.

Authors:  I-F Will Kuo; Christopher J Mundy; Becky L Eggimann; Matthew J McGrath; J Ilja Siepmann; Bin Chen; John Vieceli; Douglas J Tobias
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

7.  Quantifying water density fluctuations and compressibility of hydration shells of hydrophobic solutes and proteins.

Authors:  Sapna Sarupria; Shekhar Garde
Journal:  Phys Rev Lett       Date:  2009-07-17       Impact factor: 9.161

8.  Effects of lengthscales and attractions on the collapse of hydrophobic polymers in water.

Authors:  Manoj V Athawale; Gaurav Goel; Tuhin Ghosh; Thomas M Truskett; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

9.  Water clusters in nonpolar cavities.

Authors:  Subramanian Vaitheeswaran; Hao Yin; Jayendran C Rasaiah; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

10.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

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  5 in total

1.  Electrostatic contribution from solvent in modulating single-walled carbon nanotube association.

Authors:  Shu-Ching Ou; Sandeep Patel
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

2.  Free energetics of carbon nanotube association in aqueous inorganic NaI salt solutions: Temperature effects using all-atom molecular dynamics simulations.

Authors:  Shu-Ching Ou; Di Cui; Matthew Wezowicz; Michela Taufer; Sandeep Patel
Journal:  J Comput Chem       Date:  2015-04-13       Impact factor: 3.376

3.  Role of spatial ionic distribution on the energetics of hydrophobic assembly and properties of the water/hydrophobe interface.

Authors:  Brad A Bauer; Shuching Ou; Sandeep Patel
Journal:  Phys Chem Chem Phys       Date:  2012-01-09       Impact factor: 3.676

4.  Free energetics of carbon nanotube association in pure and aqueous ionic solutions.

Authors:  Shuching Ou; Sandeep Patel; Brad A Bauer
Journal:  J Phys Chem B       Date:  2012-07-10       Impact factor: 2.991

5.  Dynamics and energetics of hydrophobically confined water.

Authors:  Brad A Bauer; Shuching Ou; Sandeep Patel; Karthik Siva
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-05-23
  5 in total

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