Literature DB >> 22666658

A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Nadya Kobko1, Mateusz Marianski, Amparo Asensio, Robert Wieczorek, J J Dannenberg.   

Abstract

The physical explanation for the hydrophobic effect has been the subject of disagreement. Physical organic chemists tend to use a explanation related to pressure, while many biochemists prefer an explanation that involves decreased entropy of the aqueous solvent. We present DFT calculations at the B3LYP/6-31G(d,p) and X3LYP/6-31G(d,p) levels on the solvation of three noble gases (Ne, Ar, and Kr) in clusters of 50 waters. Vibrational analyses show no substantial decreases in the vibrational entropies of the waters in any of the three clusters. The observed positive free energies of transfer from the gas phase or from nonpolar solvents to water appear to be due to the work needed to make a suitable hole in the aqueous solvent. We distinguish between hydrophobic solvations (explicitly studied here) and the hydrophobic effect that occurs when a solute (or transition state) can decrease its volume through conformational change (which is not possible for the noble gases).

Entities:  

Year:  2011        PMID: 22666658      PMCID: PMC3365618          DOI: 10.1016/j.comptc.2011.11.022

Source DB:  PubMed          Journal:  Comput Theor Chem            Impact factor:   1.926


  29 in total

1.  From The Cover: The X3LYP extended density functional for accurate descriptions of nonbond interactions, spin states, and thermochemical properties.

Authors:  Xin Xu; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

2.  The importance of cooperative interactions and a solid-state paradigm to proteins: what Peptide chemists can learn from molecular crystals.

Authors:  J J Dannenberg
Journal:  Adv Protein Chem       Date:  2005

3.  Aggregation and dispersion of small hydrophobic particles in aqueous electrolyte solutions.

Authors:  Ronen Zangi; B J Berne
Journal:  J Phys Chem B       Date:  2006-11-16       Impact factor: 2.991

4.  The dewetting transition and the hydrophobic effect.

Authors:  Niharendu Choudhury; B Montgomery Pettitt
Journal:  J Am Chem Soc       Date:  2007-03-27       Impact factor: 15.419

5.  Molecular solvation in water-methanol and water-sorbitol mixtures: the roles of preferential hydration, hydrophobicity, and the equation of state.

Authors:  Prateek P Shah; Christopher J Roberts
Journal:  J Phys Chem B       Date:  2007-04-06       Impact factor: 2.991

6.  Potential of mean force of hydrophobic association: dependence on solute size.

Authors:  Emil Sobolewski; Mariusz Makowski; Cezary Czaplewski; Adam Liwo; Stanisław Ołdziej; Harold A Scheraga
Journal:  J Phys Chem B       Date:  2007-08-22       Impact factor: 2.991

Review 7.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

8.  Characterizing hydrophobicity of interfaces by using cavity formation, solute binding, and water correlations.

Authors:  Rahul Godawat; Sumanth N Jamadagni; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-25       Impact factor: 11.205

9.  Antihydrophobic cosolvent effects for alkylation reactions in water solution, particularly oxygen versus carbon alkylations of phenoxide ions.

Authors:  Ronald Breslow; Kevin Groves; M Uljana Mayer
Journal:  J Am Chem Soc       Date:  2002-04-10       Impact factor: 15.419

10.  Why are water-hydrophobic interfaces charged?

Authors:  Konstantin N Kudin; Roberto Car
Journal:  J Am Chem Soc       Date:  2008-03-01       Impact factor: 15.419

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  2 in total

1.  Aqueous solvation of polyalanine α-helices with specific water molecules and with the CPCM and SM5.2 aqueous continuum models using density functional theory.

Authors:  Mateusz Marianski; J J Dannenberg
Journal:  J Phys Chem B       Date:  2012-01-23       Impact factor: 2.991

2.  The interactions of phenylalanines in β-sheet-like structures from molecular orbital calculations using density functional theory (DFT), MP2, and CCSD(T) methods.

Authors:  Gabor Pohl; Joshua A Plumley; J J Dannenberg
Journal:  J Chem Phys       Date:  2013-06-28       Impact factor: 3.488

  2 in total

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