Literature DB >> 21987795

Extended surfaces modulate hydrophobic interactions of neighboring solutes.

Amish J Patel1, Patrick Varilly, Sumanth N Jamadagni, Hari Acharya, Shekhar Garde, David Chandler.   

Abstract

Interfaces are a most common motif in complex systems. To understand how the presence of interfaces affects hydrophobic phenomena, we use molecular simulations and theory to study hydration of solutes at interfaces. The solutes range in size from subnanometer to a few nanometers. The interfaces are self-assembled monolayers with a range of chemistries, from hydrophilic to hydrophobic. We show that the driving force for assembly in the vicinity of a hydrophobic surface is weaker than that in bulk water and decreases with increasing temperature, in contrast to that in the bulk. We explain these distinct features in terms of an interplay between interfacial fluctuations and excluded volume effects--the physics encoded in Lum-Chandler-Weeks theory [Lum K, Chandler D, Weeks JD (1999) J Phys Chem B 103:4570-4577]. Our results suggest a catalytic role for hydrophobic interfaces in the unfolding of proteins, for example, in the interior of chaperonins and in amyloid formation.

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Year:  2011        PMID: 21987795      PMCID: PMC3203787          DOI: 10.1073/pnas.1110703108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Origin of Entropy Convergence in Hydrophobic Hydration and Protein Folding.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-12-09       Impact factor: 9.161

2.  Temperature and length scale dependence of hydrophobic effects and their possible implications for protein folding.

Authors:  D M Huang; D Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

3.  Protein unfolding at interfaces: slow dynamics of alpha-helix to beta-sheet transition.

Authors:  Ananthakrishnan Sethuraman; Ganesh Vedantham; Taiji Imoto; Todd Przybycien; Georges Belfort
Journal:  Proteins       Date:  2004-09-01

4.  Thermal and structural stability of adsorbed proteins.

Authors:  Sumit Sharma; B J Berne; Sanat K Kumar
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Structure and function of enzymes adsorbed onto single-walled carbon nanotubes.

Authors:  Sandeep S Karajanagi; Alexey A Vertegel; Ravi S Kane; Jonathan S Dordick
Journal:  Langmuir       Date:  2004-12-21       Impact factor: 3.882

6.  Characterizing hydrophobicity of interfaces by using cavity formation, solute binding, and water correlations.

Authors:  Rahul Godawat; Sumanth N Jamadagni; Shekhar Garde
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-25       Impact factor: 11.205

7.  Nanoroughness, intrinsic density profile, and rigidity of the air-water interface.

Authors:  Felix Sedlmeier; Dominik Horinek; Roland R Netz
Journal:  Phys Rev Lett       Date:  2009-09-24       Impact factor: 9.161

8.  Molecular mechanism of β-sheet self-organization at water-hydrophobic interfaces.

Authors:  Ana Nikolic; Stéphanie Baud; Sarah Rauscher; Régis Pomès
Journal:  Proteins       Date:  2010-10-11

9.  Fluctuations of water near extended hydrophobic and hydrophilic surfaces.

Authors:  Amish J Patel; Patrick Varilly; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-04       Impact factor: 2.991

10.  Enthalpy-entropy contributions to salt and osmolyte effects on molecular-scale hydrophobic hydration and interactions.

Authors:  Manoj V Athawale; Sapna Sarupria; Shekhar Garde
Journal:  J Phys Chem B       Date:  2008-05-08       Impact factor: 2.991

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  27 in total

1.  Arginine mutations in antibody complementarity-determining regions display context-dependent affinity/specificity trade-offs.

Authors:  Kathryn E Tiller; Lijuan Li; Sandeep Kumar; Mark C Julian; Shekhar Garde; Peter M Tessier
Journal:  J Biol Chem       Date:  2017-08-04       Impact factor: 5.157

2.  Intrinsic disorder modulates protein self-assembly and aggregation.

Authors:  Alfonso De Simone; Craig Kitchen; Ann H Kwan; Margaret Sunde; Christopher M Dobson; Daan Frenkel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

3.  Unraveling the hydrophobic effect, one molecule at a time.

Authors:  Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-28       Impact factor: 11.205

4.  Pathways to dewetting in hydrophobic confinement.

Authors:  Richard C Remsing; Erte Xi; Srivathsan Vembanur; Sumit Sharma; Pablo G Debenedetti; Shekhar Garde; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

5.  Affinity of small-molecule solutes to hydrophobic, hydrophilic, and chemically patterned interfaces in aqueous solution.

Authors:  Jacob I Monroe; Sally Jiao; R Justin Davis; Dennis Robinson Brown; Lynn E Katz; M Scott Shell
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

6.  Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.

Authors:  Shu-Ching Ou; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2019-03-06       Impact factor: 6.006

7.  Activated drying in hydrophobic nanopores and the line tension of water.

Authors:  Ludivine Guillemot; Thierry Biben; Anne Galarneau; Gérard Vigier; Élisabeth Charlaix
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-09       Impact factor: 11.205

8.  Smoothing of the GB1 hairpin folding landscape by interfacial confinement.

Authors:  Apratim Bhattacharya; Robert B Best; Jeetain Mittal
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

9.  Patchy supramolecules as versatile tools to probe hydrophobicity in nanoglobular systems.

Authors:  Luis M Negrón; Yazmary Meléndez-Contés; José M Rivera
Journal:  J Am Chem Soc       Date:  2013-02-27       Impact factor: 15.419

10.  The hydrophobic effect, and fluctuations: The long and the short of it.

Authors:  Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-14       Impact factor: 11.205

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