Literature DB >> 19690379

To scavenge or not to scavenge: that is the question.

Elzbieta Nowak1, Anna Brzuszkiewicz, Miroslawa Dauter, Zbigniew Dauter, Gerd Rosenbaum.   

Abstract

Analysis of a series of diffraction data sets measured from four native as well as four nicotinic acid-soaked crystals of trypsin at 100 K shows a high variability in radiation-sensitivity among individual crystals for both nicotinic acid-soaked and native crystals. The level of radiation-sensitivity and the extent of its variability is statistically indistinguishable between the two conditions. This suggests that this potential scavenger does not have any statistically significant effect on the amount of radiation damage incurred in the crystals on X-ray irradiation. This is in contrast to previous results [Kauffmann et al. (2006), Structure, 14, 1099-1105] where only one crystal specimen was used for each condition (native and nicotinic acid-soaked).

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Year:  2009        PMID: 19690379      PMCID: PMC2733885          DOI: 10.1107/S0907444909026821

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  11 in total

1.  How does radiation damage in protein crystals depend on X-ray dose?

Authors:  Piotr Sliz; Stephen C Harrison; Gerd Rosenbaum
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

2.  Radioprotectant screening for cryocrystallography.

Authors:  Robert J Southworth-Davies; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2006-12-15       Impact factor: 2.616

3.  Structure studies on styrene-treated immunoglobulin crystals.

Authors:  R Sarma; G Zaloga
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

4.  Can soaked-in scavengers protect metalloprotein active sites from reduction during data collection?

Authors:  Sofia Macedo; Maria Pechlaner; Walther Schmid; Martin Weik; Katsuko Sato; Christopher Dennison; Kristina Djinović-Carugo
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

5.  Some aspects of quantitative analysis and correction of radiation damage.

Authors:  Kay Diederichs
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

Review 6.  Investigation of possible free-radical scavengers and metrics for radiation damage in protein cryocrystallography.

Authors:  James Murray; Elspeth Garman
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

7.  Cryoradiolytic reduction of crystalline heme proteins: analysis by UV-Vis spectroscopy and X-ray crystallography.

Authors:  Thorsten Beitlich; Karin Kühnel; Clemens Schulze-Briese; Robert L Shoeman; Ilme Schlichting
Journal:  J Synchrotron Radiat       Date:  2006-12-15       Impact factor: 2.616

8.  New method for extending the diffraction pattern from protein crystals and preventing their radiation damage.

Authors:  G Zaloga; R Sarma
Journal:  Nature       Date:  1974-10-11       Impact factor: 49.962

9.  Experimental determination of the radiation dose limit for cryocooled protein crystals.

Authors:  Robin Leslie Owen; Enrique Rudiño-Piñera; Elspeth F Garman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-20       Impact factor: 11.205

10.  Room-temperature scavengers for macromolecular crystallography: increased lifetimes and modified dose dependence of the intensity decay.

Authors:  Adam I Barker; Robert J Southworth-Davies; Karthik S Paithankar; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2009-02-25       Impact factor: 2.616

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  9 in total

1.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

2.  Estimate your dose: RADDOSE-3D.

Authors:  Charles S Bury; Jonathan C Brooks-Bartlett; Steven P Walsh; Elspeth F Garman
Journal:  Protein Sci       Date:  2017-11-06       Impact factor: 6.725

3.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

4.  Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate.

Authors:  Manikandan Karuppasamy; Fatemeh Karimi Nejadasl; Milos Vulovic; Abraham J Koster; Raimond B G Ravelli
Journal:  J Synchrotron Radiat       Date:  2011-04-09       Impact factor: 2.616

5.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

6.  Experimental procedure for the characterization of radiation damage in macromolecular crystals.

Authors:  Ricardo M F Leal; Gleb P Bourenkov; Olof Svensson; Darren Spruce; Matias Guijarro; Alexander N Popov
Journal:  J Synchrotron Radiat       Date:  2011-03-10       Impact factor: 2.616

7.  Bragg coherent diffraction imaging and metrics for radiation damage in protein micro-crystallography.

Authors:  H D Coughlan; C Darmanin; H J Kirkwood; N W Phillips; D Hoxley; J N Clark; D J Vine; F Hofmann; R J Harder; E Maxey; B Abbey
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

8.  To scavenge or not to scavenge, that is STILL the question.

Authors:  Elizabeth G Allan; Melissa C Kander; Ian Carmichael; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2012-12-05       Impact factor: 2.616

9.  A survey of global radiation damage to 15 different protein crystal types at room temperature: a new decay model.

Authors:  Ricardo Miguel Ferraz Leal; Gleb Bourenkov; Silvia Russi; Alexander N Popov
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

  9 in total

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