Literature DB >> 16369098

Some aspects of quantitative analysis and correction of radiation damage.

Kay Diederichs1.   

Abstract

Radiation damage is the major source of systematic error in macromolecular data collected at third-generation synchrotron beamlines. In this paper, a simple way of analysing data for radiation damage is proposed and shown to give results that are easy to interpret. Results of correction of radiation damage obtained with an exponential decay function as implemented in XSCALE (from the XDS package) are shown, and aspects of the mathematical treatment of radiation damage, as well as experimental requirements for the correction and utilization of radiation damage are discussed. Furthermore, a method for quantifying the coverage and evenness of sampling of rotation range is proposed.

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Year:  2005        PMID: 16369098     DOI: 10.1107/S0907444905031537

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  35 in total

1.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

2.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

Review 3.  Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 microm size X-ray synchrotron beam.

Authors:  Vadim Cherezov; Michael A Hanson; Mark T Griffith; Mark C Hilgart; Ruslan Sanishvili; Venugopalan Nagarajan; Sergey Stepanov; Robert F Fischetti; Peter Kuhn; Raymond C Stevens
Journal:  J R Soc Interface       Date:  2009-06-17       Impact factor: 4.118

4.  To scavenge or not to scavenge: that is the question.

Authors:  Elzbieta Nowak; Anna Brzuszkiewicz; Miroslawa Dauter; Zbigniew Dauter; Gerd Rosenbaum
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-08-14

5.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

6.  Dynamic X-ray diffraction sampling for protein crystal positioning.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad U Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

7.  Identification of patterns in diffraction intensities affected by radiation exposure.

Authors:  Dominika Borek; Zbigniew Dauter; Zbyszek Otwinowski
Journal:  J Synchrotron Radiat       Date:  2012-12-06       Impact factor: 2.616

8.  Multi-crystal native SAD analysis at 6 keV.

Authors:  Qun Liu; Youzhong Guo; Yanqi Chang; Zheng Cai; Zahra Assur; Filippo Mancia; Mark I Greene; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-30

9.  Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin: II. Introduction of an O-H...Sgamma-Fe hydrogen bond increased the reduction potential by 65 mV.

Authors:  Heiko Bönisch; Christian L Schmidt; Pierre Bianco; Rudolf Ladenstein
Journal:  J Biol Inorg Chem       Date:  2007-08-22       Impact factor: 3.358

10.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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