Literature DB >> 19675646

Design of functional metalloproteins.

Yi Lu1, Natasha Yeung, Nathan Sieracki, Nicholas M Marshall.   

Abstract

Metalloproteins catalyse some of the most complex and important processes in nature, such as photosynthesis and water oxidation. An ultimate test of our knowledge of how metalloproteins work is to design new metalloproteins. Doing so not only can reveal hidden structural features that may be missing from studies of native metalloproteins and their variants, but also can result in new metalloenzymes for biotechnological and pharmaceutical applications. Although it is much more challenging to design metalloproteins than non-metalloproteins, much progress has been made in this area, particularly in functional design, owing to recent advances in areas such as computational and structural biology.

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Year:  2009        PMID: 19675646      PMCID: PMC2770889          DOI: 10.1038/nature08304

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  86 in total

1.  Ratiometric detection of Zn(II) using chelating fluorescent protein chimeras.

Authors:  Toon H Evers; Marieke A M Appelhof; Peggy T H M de Graaf-Heuvelmans; E W Meijer; Maarten Merkx
Journal:  J Mol Biol       Date:  2007-09-14       Impact factor: 5.469

2.  Protein scaffold of a designed metalloenzyme enhances the chemoselectivity in sulfoxidation of thioanisole.

Authors:  Jun-Long Zhang; Dewain K Garner; Lei Liang; Qian Chen; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2008-02-04       Impact factor: 6.222

3.  Role of heme types in heme-copper oxidases: effects of replacing a heme b with a heme o mimic in an engineered heme-copper center in myoglobin.

Authors:  Ningyan Wang; Xuan Zhao; Yi Lu
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

4.  Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor.

Authors:  Frank V Cochran; Sophia P Wu; Wei Wang; Vikas Nanda; Jeffery G Saven; Michael J Therien; William F DeGrado
Journal:  J Am Chem Soc       Date:  2005-02-09       Impact factor: 15.419

5.  Artificial nucleases.

Authors:  C B Chen; L Milne; R Landgraf; D M Perrin; D S Sigman
Journal:  Chembiochem       Date:  2001-10-01       Impact factor: 3.164

6.  Binding of Cu(II) or Zn(II) in a de novo designed triple-stranded alpha-helical coiled-coil toward a prototype for a metalloenzyme.

Authors:  T Kiyokawa; K Kanaori; K Tajima; M Koike; T Mizuno; J-I Oku; T Tanaka
Journal:  J Pept Res       Date:  2004-04

7.  The correlation of 113Cd NMR and 111mCd PAC spectroscopies provides a powerful approach for the characterization of the structure of Cd(II)-substituted Zn(II) proteins.

Authors:  Olga Iranzo; Tamas Jakusch; Kyung-Hoon Lee; Lars Hemmingsen; Vincent L Pecoraro
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

8.  Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase.

Authors:  M Hay; J H Richards; Y Lu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

9.  Artificial metalloenzymes for enantioselective catalysis based on biotin-avidin.

Authors:  Jérôme Collot; Julieta Gradinaru; Nicolas Humbert; Myriem Skander; Andrea Zocchi; Thomas R Ward
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Design and engineering of an O(2) transport protein.

Authors:  Ronald L Koder; J L Ross Anderson; Lee A Solomon; Konda S Reddy; Christopher C Moser; P Leslie Dutton
Journal:  Nature       Date:  2009-03-19       Impact factor: 49.962

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  172 in total

1.  DNA targeting and cleavage by an engineered metalloprotein dimer.

Authors:  Siu Wah Wong-Deyrup; Charulata Prasannan; Cynthia M Dupureur; Sonya J Franklin
Journal:  J Biol Inorg Chem       Date:  2011-11-25       Impact factor: 3.358

2.  Engineering a zinc binding site into the de novo designed protein DS119 with a βαβ structure.

Authors:  Cheng Zhu; Changsheng Zhang; Huanhuan Liang; Luhua Lai
Journal:  Protein Cell       Date:  2012-01-10       Impact factor: 14.870

3.  Light-driven oxygen production from superoxide by Mn-binding bacterial reaction centers.

Authors:  James P Allen; Tien L Olson; Paul Oyala; Wei-Jen Lee; Aaron A Tufts; JoAnn C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

4.  Protein design: A metalloenzyme reloaded.

Authors:  Birte Höcker
Journal:  Nat Chem Biol       Date:  2012-02-15       Impact factor: 15.040

Review 5.  Engineered proteins: redox properties and their applications.

Authors:  Shradha Prabhulkar; Hui Tian; Xiaotang Wang; Jun-Jie Zhu; Chen-Zhong Li
Journal:  Antioxid Redox Signal       Date:  2012-06-11       Impact factor: 8.401

6.  Control of enzyme reaction by a designed metal-ion-dependent α-helical coiled-coil protein.

Authors:  Shigeo Murase; Sonoko Ishino; Yoshizumi Ishino; Toshiki Tanaka
Journal:  J Biol Inorg Chem       Date:  2012-03-31       Impact factor: 3.358

7.  Bioinorganic chemistry: Zeroing in on a new copper site.

Authors:  Amy C Rosenzweig
Journal:  Nat Chem       Date:  2009-12       Impact factor: 24.427

8.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

9.  Tuning Supramolecular Selectivity for Hydrosulfide: Linear Free Energy Relationships Reveal Preferential C-H Hydrogen Bond Interactions.

Authors:  Hazel A Fargher; Nathanael Lau; H Camille Richardson; Paul Ha-Yeon Cheong; Michael M Haley; Michael D Pluth; Darren W Johnson
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

10.  A protein engineered to bind uranyl selectively and with femtomolar affinity.

Authors:  Lu Zhou; Mike Bosscher; Changsheng Zhang; Salih Ozçubukçu; Liang Zhang; Wen Zhang; Charles J Li; Jianzhao Liu; Mark P Jensen; Luhua Lai; Chuan He
Journal:  Nat Chem       Date:  2014-01-26       Impact factor: 24.427

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