Literature DB >> 19636799

Monitoring conformational dynamics with solid-state R 1rho experiments.

Caitlin M Quinn1, Ann E McDermott.   

Abstract

A new application of solid-state rotating frame (R(1rho)) relaxation experiments to observe conformational dynamics is presented. Studies on a model compound, dimethyl sulfone (DMS), show that R(1rho) relaxation due to reorientation of a chemical shift anisotropy (CSA) tensor undergoing chemical exchange can be used to monitor slow-to-intermediate timescale conformational exchange processes. Control experiments used d ( 6 ) -DMS and alanine to confirm that the technique is monitoring reorientation of the CSA tensor rather than dipolar interactions or methyl group rotation. The application of this method to proteins could represent a new site-specific probe of conformational dynamics.

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Year:  2009        PMID: 19636799     DOI: 10.1007/s10858-009-9346-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

1.  Microsecond time scale dynamics in the RXR DNA-binding domain from a combination of spin-echo and off-resonance rotating frame relaxation measurements.

Authors:  F A Mulder; P J van Tilborg; R Kaptein; R Boelens
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

Review 2.  Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules.

Authors:  A G Palmer; C D Kroenke; J P Loria
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  Off-resonance R1rho relaxation outside of the fast exchange limit: an experimental study of a cavity mutant of T4 lysozyme.

Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

4.  SPINEVOLUTION: a powerful tool for the simulation of solid and liquid state NMR experiments.

Authors:  Mikhail Veshtort; Robert G Griffin
Journal:  J Magn Reson       Date:  2005-12-07       Impact factor: 2.229

Review 5.  An NMR perspective on enzyme dynamics.

Authors:  David D Boehr; H Jane Dyson; Peter E Wright
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  ODESSA, a New 1D NMR Exchange Experiment for Chemically Equivalent Nuclei in Rotating Solids

Authors: 
Journal:  J Magn Reson A       Date:  1996-11

7.  Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments.

Authors:  Francesca Massi; Michael J Grey; Arthur G Palmer
Journal:  Protein Sci       Date:  2005-03       Impact factor: 6.725

8.  Selective inversion investigations of slow molecular motion in solid state deuteron NMR spectroscopy.

Authors:  M J Brown; R L Vold; G L Hoatson
Journal:  Solid State Nucl Magn Reson       Date:  1996-04       Impact factor: 2.293

9.  Expanding the frequency range of the solid-state T1rho experiment for heteronuclear dipolar relaxation.

Authors:  Alexey Krushelnitsky; Rauf Kurbanov; Detlef Reichert; Guenter Hempel; Horst Schneider; Vladimir Fedotov
Journal:  Solid State Nucl Magn Reson       Date:  2002-12       Impact factor: 2.293

Review 10.  Characterization of enzyme motions by solution NMR relaxation dispersion.

Authors:  J Patrick Loria; Rebecca B Berlow; Eric D Watt
Journal:  Acc Chem Res       Date:  2008-02-19       Impact factor: 22.384

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  14 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

2.  Solid-state NMR reveals a comprehensive view of the dynamics of the flexible, disordered N-terminal domain of amyloid-β fibrils.

Authors:  Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu; Liliya Vugmeyster
Journal:  J Biol Chem       Date:  2019-02-08       Impact factor: 5.157

3.  Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.

Authors:  Dominique Marion; Diego F Gauto; Isabel Ayala; Karine Giandoreggio-Barranco; Paul Schanda
Journal:  Chemphyschem       Date:  2018-12-20       Impact factor: 3.102

4.  Quantifying conformational dynamics using solid-state R₁ρ experiments.

Authors:  Caitlin M Quinn; Ann E McDermott
Journal:  J Magn Reson       Date:  2012-05-29       Impact factor: 2.229

5.  Mechanical, structural, and dynamical modifications of cholesterol exposed porcine aortic elastin.

Authors:  Kubra Bilici; Steven W Morgan; Moshe C Silverstein; Yunjie Wang; Hyung Jin Sun; Yanhang Zhang; Gregory S Boutis
Journal:  Biophys Chem       Date:  2016-09-09       Impact factor: 2.352

6.  Deuteron Solid-State NMR Relaxation Measurements Reveal Two Distinct Conformational Exchange Processes in the Disordered N-Terminal Domain of Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dan Fai Au; Dmitry Ostrovsky; Riqiang Fu
Journal:  Chemphyschem       Date:  2019-06-14       Impact factor: 3.102

7.  Refocusing CSA during magic angle spinning rotating-frame relaxation experiments.

Authors:  Eric G Keeler; Keith J Fritzsching; Ann E McDermott
Journal:  J Magn Reson       Date:  2018-09-14       Impact factor: 2.229

Review 8.  Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Authors:  Liliya Vugmeyster
Journal:  Solid State Nucl Magn Reson       Date:  2021-01-07       Impact factor: 2.293

Review 9.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Authors:  Paul Schanda; Matthias Ernst
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

10.  Cross-Correlated Relaxation of Dipolar Coupling and Chemical-Shift Anisotropy in Magic-Angle Spinning R1ρ NMR Measurements: Application to Protein Backbone Dynamics Measurements.

Authors:  Vilius Kurauskas; Emmanuelle Weber; Audrey Hessel; Isabel Ayala; Dominique Marion; Paul Schanda
Journal:  J Phys Chem B       Date:  2016-08-19       Impact factor: 2.991

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