Literature DB >> 16338152

SPINEVOLUTION: a powerful tool for the simulation of solid and liquid state NMR experiments.

Mikhail Veshtort1, Robert G Griffin.   

Abstract

Exact numerical simulations of NMR experiments are often required for the development of new techniques and for the extraction of structural and dynamic information from the spectra. Simulations of solid-state magic angle spinning (MAS) experiments can be particularly demanding both computationally and in terms of the programming required to carry them out, even if special simulation software is used. We recently developed a number of approaches that dramatically improve the efficiency and allow a high degree of automation of these computations. In the present paper, we describe SPINEVOLUTION, a highly optimized computer program that implements the new methodology. The algorithms used in the program will be described separately. Although particularly efficient for the simulation of experiments with complex pulse sequences and multi-spin systems in solids, SPINEVOLUTION is a versatile and easy to use tool for the simulation and optimization of virtually any NMR experiment. The performance of SPINEVOLUTION was compared with that of another recently developed NMR simulation package, SIMPSON. Benchmarked on a series of examples, SPINEVOLUTION was consistently found to be orders of magnitude faster. At the time of publication, the program is available gratis for non-commercial use.

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Year:  2005        PMID: 16338152     DOI: 10.1016/j.jmr.2005.07.018

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  108 in total

1.  Accurate determination of interstrand distances and alignment in amyloid fibrils by magic angle spinning NMR.

Authors:  Marc A Caporini; Vikram S Bajaj; Mikhail Veshtort; Anthony Fitzpatrick; Cait E MacPhee; Michele Vendruscolo; Christopher M Dobson; Robert G Griffin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

2.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

3.  Shift-driven modulations of spin-echo signals.

Authors:  Pieter E S Smith; Guy Bensky; Gonzalo A Alvarez; Gershon Kurizki; Lucio Frydman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

4.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

5.  Oligomerization state and supramolecular structure of the HIV-1 Vpu protein transmembrane segment in phospholipid bilayers.

Authors:  Jun-Xia Lu; Simon Sharpe; Rodolfo Ghirlando; Wai-Ming Yau; Robert Tycko
Journal:  Protein Sci       Date:  2010-10       Impact factor: 6.725

6.  Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach.

Authors:  Songlin Wang; Isamu Matsuda; Fei Long; Yoshitaka Ishii
Journal:  J Biomol NMR       Date:  2016-01-19       Impact factor: 2.835

7.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Authors:  Dwaipayan Mukhopadhyay; Chitrak Gupta; Theint Theint; Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2018-10-30       Impact factor: 2.229

8.  One-pot Solvothermal Synthesis of Well-ordered Layered Sodium Aluminoalcoholate Complex: A Useful Precursor for the Preparation of Porous Al2O3 Particles.

Authors:  Xiansen Li; Vladimir K Michaelis; Ta-Chung Ong; Stacey J Smith; Ian McKay; Peter Müller; Robert G Griffin; Evelyn N Wang
Journal:  CrystEngComm       Date:  2014-04-14       Impact factor: 3.545

9.  Distortional binding of transition state analogs to human purine nucleoside phosphorylase probed by magic angle spinning solid-state NMR.

Authors:  Mathew J Vetticatt; Boris Itin; Gary B Evans; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

10.  Nmrglue: an open source Python package for the analysis of multidimensional NMR data.

Authors:  Jonathan J Helmus; Christopher P Jaroniec
Journal:  J Biomol NMR       Date:  2013-03-02       Impact factor: 2.835

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