Literature DB >> 19596900

Transcription independent insulation at TFIIIC-dependent insulators.

Lourdes Valenzuela1, Namrita Dhillon, Rohinton T Kamakaka.   

Abstract

Chromatin insulators separate active from repressed chromatin domains. In yeast the RNA pol III transcription machinery bound to tRNA genes function with histone acetylases and chromatin remodelers to restrict the spread of heterochromatin. Our results collectively demonstrate that binding of TFIIIC is necessary for insulation but binding of TFIIIB along with TFIIIC likely improves the probability of complex formation at an insulator. Insulation by this transcription factor occurs in the absence of RNA polymerase III or polymerase II but requires specific histone acetylases and chromatin remodelers. This analysis identifies a minimal set of factors required for insulation.

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Year:  2009        PMID: 19596900      PMCID: PMC2746139          DOI: 10.1534/genetics.109.106203

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  49 in total

Review 1.  The RNA polymerase III transcription apparatus.

Authors:  E P Geiduschek; G A Kassavetis
Journal:  J Mol Biol       Date:  2001-06-29       Impact factor: 5.469

2.  Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

Authors:  Huck Hui Ng; François Robert; Richard A Young; Kevin Struhl
Journal:  Genes Dev       Date:  2002-04-01       Impact factor: 11.361

3.  The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress.

Authors:  Marc Damelin; Itamar Simon; Terence I Moy; Boris Wilson; Suzanne Komili; Paul Tempst; Frederick P Roth; Richard A Young; Bradley R Cairns; Pamela A Silver
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

Review 4.  Breaking through to the other side: silencers and barriers.

Authors:  Namrita Dhillon; Rohinton T Kamakaka
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

5.  Transitions in histone acetylation reveal boundaries of three separately regulated neighboring loci.

Authors:  M D Litt; M Simpson; F Recillas-Targa; M N Prioleau; G Felsenfeld
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

Review 6.  Recruitment of RNA polymerase III to its target promoters.

Authors:  Laura Schramm; Nouria Hernandez
Journal:  Genes Dev       Date:  2002-10-15       Impact factor: 11.361

Review 7.  Heterochromatin and epigenetic control of gene expression.

Authors:  Shiv I S Grewal; Danesh Moazed
Journal:  Science       Date:  2003-08-08       Impact factor: 47.728

8.  General regulatory factors (GRFs) as genome partitioners.

Authors:  Genevieve Fourel; Tsuyoshi Miyake; Pierre-Antoine Defossez; Rong Li; Eric Gilson
Journal:  J Biol Chem       Date:  2002-08-27       Impact factor: 5.157

9.  RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae.

Authors:  D Donze; R T Kamakaka
Journal:  EMBO J       Date:  2001-02-01       Impact factor: 11.598

10.  TFIIIC binding sites function as both heterochromatin barriers and chromatin insulators in Saccharomyces cerevisiae.

Authors:  Tiffany A Simms; Sandra L Dugas; Jason C Gremillion; Megan E Ibos; M Nicole Dandurand; Tasha T Toliver; Daniel J Edwards; David Donze
Journal:  Eukaryot Cell       Date:  2008-10-10
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  36 in total

1.  Learning about genomics and disease from the anucleate human red blood cell.

Authors:  Edward J Benz
Journal:  J Clin Invest       Date:  2010-11-22       Impact factor: 14.808

2.  Mutation of a barrier insulator in the human ankyrin-1 gene is associated with hereditary spherocytosis.

Authors:  Patrick G Gallagher; Laurie A Steiner; Robert I Liem; Ashley N Owen; Amanda P Cline; Nancy E Seidel; Lisa J Garrett; David M Bodine
Journal:  J Clin Invest       Date:  2010-11-22       Impact factor: 14.808

3.  Mod5 protein binds to tRNA gene complexes and affects local transcriptional silencing.

Authors:  Matthew Pratt-Hyatt; Dave A Pai; Rebecca A Haeusler; Glenn G Wozniak; Paul D Good; Erin L Miller; Ian X McLeod; John R Yates; Anita K Hopper; David R Engelke
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

4.  Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization.

Authors:  Marta Radman-Livaja; Giulia Ruben; Assaf Weiner; Nir Friedman; Rohinton Kamakaka; Oliver J Rando
Journal:  EMBO J       Date:  2011-02-18       Impact factor: 11.598

5.  tRNA genes protect a reporter gene from epigenetic silencing in mouse cells.

Authors:  Thomas Ebersole; Jung-Hyun Kim; Alexander Samoshkin; Natalay Kouprina; Adam Pavlicek; Robert J White; Vladimir Larionov
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

6.  tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Authors:  Omar Hamdani; Namrita Dhillon; Tsung-Han S Hsieh; Takahiro Fujita; Josefina Ocampo; Jacob G Kirkland; Josh Lawrimore; Tetsuya J Kobayashi; Brandon Friedman; Derek Fulton; Kenneth Y Wu; Răzvan V Chereji; Masaya Oki; Kerry Bloom; David J Clark; Oliver J Rando; Rohinton T Kamakaka
Journal:  Mol Cell Biol       Date:  2019-04-02       Impact factor: 4.272

Review 7.  tDNA insulators and the emerging role of TFIIIC in genome organization.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Transcription       Date:  2012-08-14

Review 8.  Insulators and promoters: closer than we think.

Authors:  Jesse R Raab; Rohinton T Kamakaka
Journal:  Nat Rev Genet       Date:  2010-05-05       Impact factor: 53.242

9.  The human Pol III transcriptome and gene information flow.

Authors:  Ken-ichi Noma; Rohinton T Kamakaka
Journal:  Nat Struct Mol Biol       Date:  2010-05       Impact factor: 15.369

Review 10.  Nuclear organization and genome function.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Annu Rev Cell Dev Biol       Date:  2012-08-17       Impact factor: 13.827

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