Literature DB >> 22889843

tDNA insulators and the emerging role of TFIIIC in genome organization.

Kevin Van Bortle1, Victor G Corces.   

Abstract

Recent findings provide evidence that tDNAs function as chromatin insulators from yeast to humans. TFIIIC, a transcription factor that interacts with the B-box in tDNAs as well as thousands of ETC sites in the genome, is responsible for insulator function. Though tDNAs are capable of enhancer-blocking and barrier activities for which insulators are defined, new insights into the relationship between insulators and chromatin structure suggest that TFIIIC serves a complex role in genome organization. We review the role of tRNA genes and TFIIIC as chromatin insulators, and highlight recent findings that have broadened our understanding of insulators in genome biology.

Entities:  

Keywords:  CTCF; ETC loci; Epigenetics; chromatin; tRNA genes

Mesh:

Substances:

Year:  2012        PMID: 22889843      PMCID: PMC3630181          DOI: 10.4161/trns.21579

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  76 in total

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Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

2.  tRNA genes protect a reporter gene from epigenetic silencing in mouse cells.

Authors:  Thomas Ebersole; Jung-Hyun Kim; Alexander Samoshkin; Natalay Kouprina; Adam Pavlicek; Robert J White; Vladimir Larionov
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

Review 3.  RNA polymerase III transcription control elements: themes and variations.

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Journal:  Gene       Date:  2011-06-25       Impact factor: 3.688

4.  Regulation of chromatin organization and inducible gene expression by a Drosophila insulator.

Authors:  Ashley M Wood; Kevin Van Bortle; Edward Ramos; Naomi Takenaka; Margaret Rohrbaugh; Brian C Jones; Keith C Jones; Victor G Corces
Journal:  Mol Cell       Date:  2011-10-07       Impact factor: 17.970

5.  Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus.

Authors:  Yoon Jung Kim; Katharine R Cecchini; Tae Hoon Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

6.  CTCF-mediated functional chromatin interactome in pluripotent cells.

Authors:  Lusy Handoko; Han Xu; Guoliang Li; Chew Yee Ngan; Elaine Chew; Marie Schnapp; Charlie Wah Heng Lee; Chaopeng Ye; Joanne Lim Hui Ping; Fabianus Mulawadi; Eleanor Wong; Jianpeng Sheng; Yubo Zhang; Thompson Poh; Chee Seng Chan; Galih Kunarso; Atif Shahab; Guillaume Bourque; Valere Cacheux-Rataboul; Wing-Kin Sung; Yijun Ruan; Chia-Lin Wei
Journal:  Nat Genet       Date:  2011-06-19       Impact factor: 38.330

Review 7.  On emerging nuclear order.

Authors:  Indika Rajapakse; Mark Groudine
Journal:  J Cell Biol       Date:  2011-03-07       Impact factor: 10.539

8.  Nucleoporin mediated nuclear positioning and silencing of HMR.

Authors:  Giulia J Ruben; Jacob G Kirkland; Tracy MacDonough; Miao Chen; Rudra N Dubey; Marc R Gartenberg; Rohinton T Kamakaka
Journal:  PLoS One       Date:  2011-07-19       Impact factor: 3.240

9.  Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells.

Authors:  Lucie Carrière; Sébastien Graziani; Olivier Alibert; Yad Ghavi-Helm; Fayçal Boussouar; Hélène Humbertclaude; Sylvie Jounier; Jean-Christophe Aude; Céline Keime; Janos Murvai; Mario Foglio; Marta Gut; Ivo Gut; Mark Lathrop; Julie Soutourina; Matthieu Gérard; Michel Werner
Journal:  Nucleic Acids Res       Date:  2011-09-12       Impact factor: 16.971

10.  The proteomes of transcription factories containing RNA polymerases I, II or III.

Authors:  Svitlana Melnik; Binwei Deng; Argyris Papantonis; Sabyasachi Baboo; Ian M Carr; Peter R Cook
Journal:  Nat Methods       Date:  2011-09-25       Impact factor: 28.547

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  23 in total

1.  Transcription of angiogenin and ribonuclease 4 is regulated by RNA polymerase III elements and a CCCTC binding factor (CTCF)-dependent intragenic chromatin loop.

Authors:  Jinghao Sheng; Chi Luo; Yuxiang Jiang; Philip W Hinds; Zhengping Xu; Guo-fu Hu
Journal:  J Biol Chem       Date:  2014-03-21       Impact factor: 5.157

2.  Influence of sex on genetic regulation of "drinking in the dark" alcohol consumption.

Authors:  Lauren A Vanderlinden; Laura M Saba; Beth Bennett; Paula L Hoffman; Boris Tabakoff
Journal:  Mamm Genome       Date:  2015-01-06       Impact factor: 2.957

3.  tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Authors:  Omar Hamdani; Namrita Dhillon; Tsung-Han S Hsieh; Takahiro Fujita; Josefina Ocampo; Jacob G Kirkland; Josh Lawrimore; Tetsuya J Kobayashi; Brandon Friedman; Derek Fulton; Kenneth Y Wu; Răzvan V Chereji; Masaya Oki; Kerry Bloom; David J Clark; Oliver J Rando; Rohinton T Kamakaka
Journal:  Mol Cell Biol       Date:  2019-04-02       Impact factor: 4.272

4.  tRNA processing defects induce replication stress and Chk2-dependent disruption of piRNA transcription.

Authors:  Anahi Molla-Herman; Ana Maria Vallés; Carine Ganem-Elbaz; Christophe Antoniewski; Jean-René Huynh
Journal:  EMBO J       Date:  2015-10-15       Impact factor: 11.598

Review 5.  Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function.

Authors:  Todd Schoborg; Mariano Labrador
Journal:  Cell Mol Life Sci       Date:  2014-07-11       Impact factor: 9.261

6.  Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila.

Authors:  Chin-Tong Ong; Kevin Van Bortle; Edward Ramos; Victor G Corces
Journal:  Cell       Date:  2013-09-19       Impact factor: 41.582

Review 7.  The role of chromatin insulators in nuclear architecture and genome function.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Curr Opin Genet Dev       Date:  2013-01-05       Impact factor: 5.578

Review 8.  Chromatin insulators: linking genome organization to cellular function.

Authors:  Jennifer E Phillips-Cremins; Victor G Corces
Journal:  Mol Cell       Date:  2013-05-23       Impact factor: 17.970

Review 9.  Architectural proteins: regulators of 3D genome organization in cell fate.

Authors:  Elena Gómez-Díaz; Victor G Corces
Journal:  Trends Cell Biol       Date:  2014-09-10       Impact factor: 20.808

10.  MIR retrotransposon sequences provide insulators to the human genome.

Authors:  Jianrong Wang; Cristina Vicente-García; Davide Seruggia; Eduardo Moltó; Ana Fernandez-Miñán; Ana Neto; Elbert Lee; José Luis Gómez-Skarmeta; Lluís Montoliu; Victoria V Lunyak; I King Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

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