Literature DB >> 21112302

The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein.

Gregg T Beckham1, Yannick J Bomble, James F Matthews, Courtney B Taylor, Michael G Resch, John M Yarbrough, Steve R Decker, Lintao Bu, Xiongce Zhao, Clare McCabe, Jakob Wohlert, Malin Bergenstråhle, John W Brady, William S Adney, Michael E Himmel, Michael F Crowley.   

Abstract

Fungi and bacteria secrete glycoprotein cocktails to deconstruct cellulose. Cellulose-degrading enzymes (cellulases) are often modular, with catalytic domains for cellulose hydrolysis and carbohydrate-binding modules connected by linkers rich in serine and threonine with O-glycosylation. Few studies have probed the role that the linker and O-glycans play in catalysis. Since different expression and growth conditions produce different glycosylation patterns that affect enzyme activity, the structure-function relationships that glycosylation imparts to linkers are relevant for understanding cellulase mechanisms. Here, the linker of the Trichoderma reesei Family 7 cellobiohydrolase (Cel7A) is examined by simulation. Our results suggest that the Cel7A linker is an intrinsically disordered protein with and without glycosylation. Contrary to the predominant view, the O-glycosylation does not change the stiffness of the linker, as measured by the relative fluctuations in the end-to-end distance; rather, it provides a 16 Å extension, thus expanding the operating range of Cel7A. We explain observations from previous biochemical experiments in the light of results obtained here, and compare the Cel7A linker with linkers from other cellulases with sequence-based tools to predict disorder. This preliminary screen indicates that linkers from Family 7 enzymes from other genera and other cellulases within T. reesei may not be as disordered, warranting further study.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21112302      PMCID: PMC2998629          DOI: 10.1016/j.bpj.2010.10.032

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  57 in total

Review 1.  Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds.

Authors:  Robert G Spiro
Journal:  Glycobiology       Date:  2002-04       Impact factor: 4.313

2.  Characterization of cellobiohydrolase I (Cel7A) glycoforms from extracts of Trichoderma reesei using capillary isoelectric focusing and electrospray mass spectrometry.

Authors:  J P Hu; P Lanthier; T C White; S G McHugh; M Yaguchi; R Roy; P Thibault
Journal:  J Chromatogr B Biomed Sci Appl       Date:  2001-03-10

3.  Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms.

Authors:  Jianyin Shao; Stephen W Tanner; Nephi Thompson; Thomas E Cheatham
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

Review 4.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

5.  Role of the interdomain linker peptide of Trichoderma reesei cellobiohydrolase I in its interaction with crystalline cellulose.

Authors:  M Srisodsuk; T Reinikainen; M Penttilä; T T Teeri
Journal:  J Biol Chem       Date:  1993-10-05       Impact factor: 5.157

6.  The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei.

Authors:  C Divne; J Ståhlberg; T Reinikainen; L Ruohonen; G Pettersson; J K Knowles; T T Teeri; T A Jones
Journal:  Science       Date:  1994-07-22       Impact factor: 47.728

7.  Computational simulations of the Trichoderma reesei cellobiohydrolase I acting on microcrystalline cellulose Ibeta: the enzyme-substrate complex.

Authors:  Linghao Zhong; James F Matthews; Peter I Hansen; Michael F Crowley; Joseph M Cleary; Ross C Walker; Mark R Nimlos; Charles L Brooks; William S Adney; Michael E Himmel; John W Brady
Journal:  Carbohydr Res       Date:  2009-07-18       Impact factor: 2.104

8.  Structure and dynamics of end-to-end loop formation of the penta-peptide Cys-Ala-Gly-Gln-Trp in implicit solvents.

Authors:  In-Chul Yeh; Anders Wallqvist
Journal:  J Phys Chem B       Date:  2009-09-10       Impact factor: 2.991

9.  Implications of cellobiohydrolase glycosylation for use in biomass conversion.

Authors:  Tina Jeoh; William Michener; Michael E Himmel; Stephen R Decker; William S Adney
Journal:  Biotechnol Biofuels       Date:  2008-05-01       Impact factor: 6.040

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  34 in total

1.  Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module.

Authors:  Courtney B Taylor; M Faiz Talib; Clare McCabe; Lintao Bu; William S Adney; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2011-12-06       Impact factor: 5.157

2.  Product binding varies dramatically between processive and nonprocessive cellulase enzymes.

Authors:  Lintao Bu; Mark R Nimlos; Michael R Shirts; Jerry Ståhlberg; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

3.  Modeling the self-assembly of the cellulosome enzyme complex.

Authors:  Yannick J Bomble; Gregg T Beckham; James F Matthews; Mark R Nimlos; Michael E Himmel; Michael F Crowley
Journal:  J Biol Chem       Date:  2010-11-22       Impact factor: 5.157

4.  Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose.

Authors:  Christina M Payne; Michael G Resch; Liqun Chen; Michael F Crowley; Michael E Himmel; Larry E Taylor; Mats Sandgren; Jerry Ståhlberg; Ingeborg Stals; Zhongping Tan; Gregg T Beckham
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-19       Impact factor: 11.205

5.  Computational investigation of the pH dependence of loop flexibility and catalytic function in glycoside hydrolases.

Authors:  Lintao Bu; Michael F Crowley; Michael E Himmel; Gregg T Beckham
Journal:  J Biol Chem       Date:  2013-03-15       Impact factor: 5.157

6.  Initial recognition of a cellodextrin chain in the cellulose-binding tunnel may affect cellobiohydrolase directional specificity.

Authors:  Pavan K Ghattyvenkatakrishna; Emal M Alekozai; Gregg T Beckham; Roland Schulz; Michael F Crowley; Edward C Uberbacher; Xiaolin Cheng
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

7.  A single-molecule analysis reveals morphological targets for cellulase synergy.

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Journal:  Nat Chem Biol       Date:  2013-04-07       Impact factor: 15.040

8.  Influence of Linker Length Variations on the Biomass-Degrading Performance of Heat-Active Enzyme Chimeras.

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Journal:  Mol Biotechnol       Date:  2016-04       Impact factor: 2.695

9.  Crystallization and preliminary X-ray diffraction analysis of Hypocrea jecorina Cel7A in two new crystal forms.

Authors:  Annette M Bodenheimer; Matthew J Cuneo; Paul D Swartz; Junhong He; Hugh M O'Neill; Dean A A Myles; Barbara R Evans; Flora Meilleur
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-10       Impact factor: 1.056

Review 10.  Conformational flexibility of N-glycans in solution studied by REMD simulations.

Authors:  Suyong Re; Wataru Nishima; Naoyuki Miyashita; Yuji Sugita
Journal:  Biophys Rev       Date:  2012-09-01
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