Literature DB >> 19589966

Positive selection of tyrosine loss in metazoan evolution.

Chris Soon Heng Tan1, Adrian Pasculescu, Wendell A Lim, Tony Pawson, Gary D Bader, Rune Linding.   

Abstract

John Nash showed that within a complex system, individuals are best off if they make the best decision that they can, taking into account the decisions of the other individuals. Here, we investigate whether similar principles influence the evolution of signaling networks in multicellular animals. Specifically, by analyzing a set of metazoan species we observed a striking negative correlation of genomically encoded tyrosine content with biological complexity (as measured by the number of cell types in each organism). We discuss how this observed tyrosine loss correlates with the expansion of tyrosine kinases in the evolution of the metazoan lineage and how it may relate to the optimization of signaling systems in multicellular animals. We propose that this phenomenon illustrates genome-wide adaptive evolution to accommodate beneficial genetic perturbation.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19589966      PMCID: PMC3066034          DOI: 10.1126/science.1174301

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  14 in total

1.  Molecular biology and evolution. Can genes explain biological complexity?

Authors:  E Szathmáry; F Jordán; C Pál
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

Review 2.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

3.  Systematic discovery of in vivo phosphorylation networks.

Authors:  Rune Linding; Lars Juhl Jensen; Gerard J Ostheimer; Marcel A T M van Vugt; Claus Jørgensen; Ioana M Miron; Francesca Diella; Karen Colwill; Lorne Taylor; Kelly Elder; Pavel Metalnikov; Vivian Nguyen; Adrian Pasculescu; Jing Jin; Jin Gyoon Park; Leona D Samson; James R Woodgett; Robert B Russell; Peer Bork; Michael B Yaffe; Tony Pawson
Journal:  Cell       Date:  2007-06-14       Impact factor: 41.582

4.  Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages.

Authors:  David Pincus; Ivica Letunic; Peer Bork; Wendell A Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-03       Impact factor: 11.205

Review 5.  Recognition and specificity in protein tyrosine kinase-mediated signalling.

Authors:  Z Songyang; L C Cantley
Journal:  Trends Biochem Sci       Date:  1995-11       Impact factor: 13.807

6.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

7.  Linear motif atlas for phosphorylation-dependent signaling.

Authors:  Martin Lee Miller; Lars Juhl Jensen; Francesca Diella; Claus Jørgensen; Michele Tinti; Lei Li; Marilyn Hsiung; Sirlester A Parker; Jennifer Bordeaux; Thomas Sicheritz-Ponten; Marina Olhovsky; Adrian Pasculescu; Jes Alexander; Stefan Knapp; Nikolaj Blom; Peer Bork; Shawn Li; Gianni Cesareni; Tony Pawson; Benjamin E Turk; Michael B Yaffe; Søren Brunak; Rune Linding
Journal:  Sci Signal       Date:  2008-09-02       Impact factor: 8.192

8.  The protist, Monosiga brevicollis, has a tyrosine kinase signaling network more elaborate and diverse than found in any known metazoan.

Authors:  Gerard Manning; Susan L Young; W Todd Miller; Yufeng Zhai
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-10       Impact factor: 11.205

Review 9.  Tyrosine phosphorylation: thirty years and counting.

Authors:  Tony Hunter
Journal:  Curr Opin Cell Biol       Date:  2009-03-09       Impact factor: 8.382

10.  Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae?

Authors:  Douglas W Raiford; Esley M Heizer; Robert V Miller; Hiroshi Akashi; Michael L Raymer; Dan E Krane
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

View more
  35 in total

Review 1.  Identification of aberrant pathways and network activities from high-throughput data.

Authors:  Jinlian Wang; Yuji Zhang; Catalin Marian; Habtom W Ressom
Journal:  Brief Bioinform       Date:  2012-01-27       Impact factor: 11.622

2.  Metazoan innovation: from aromatic amino acids to extracellular signaling.

Authors:  Katrina M Kutchko; Jessica Siltberg-Liberles
Journal:  Amino Acids       Date:  2013-05-21       Impact factor: 3.520

3.  Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation.

Authors:  Siddharth Pandya; Travis J Struck; Brian K Mannakee; Mary Paniscus; Ryan N Gutenkunst
Journal:  Mol Biol Evol       Date:  2014-10-13       Impact factor: 16.240

4.  Mutational properties of amino acid residues: implications for evolvability of phosphorylatable residues.

Authors:  Pau Creixell; Erwin M Schoof; Chris Soon Heng Tan; Rune Linding
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-09-19       Impact factor: 6.237

5.  Correlated evolution between CK1δ Protein and the Serine-rich Motif Contributes to Regulating the Mammalian Circadian Clock.

Authors:  Lijuan Xing; Yang An; Guangsen Shi; Jie Yan; Pancheng Xie; Zhipeng Qu; Zhihui Zhang; Zhiwei Liu; Dejing Pan; Ying Xu
Journal:  J Biol Chem       Date:  2016-11-22       Impact factor: 5.157

6.  Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.

Authors:  Thomas Corwin; Jonathan Woodsmith; Federico Apelt; Jean-Fred Fontaine; David Meierhofer; Johannes Helmuth; Arndt Grossmann; Miguel A Andrade-Navarro; Bryan A Ballif; Ulrich Stelzl
Journal:  Cell Syst       Date:  2017-08-23       Impact factor: 10.304

Review 7.  Homing in: Mechanisms of Substrate Targeting by Protein Kinases.

Authors:  Chad J Miller; Benjamin E Turk
Journal:  Trends Biochem Sci       Date:  2018-03-12       Impact factor: 13.807

Review 8.  Evolution of SH2 domains and phosphotyrosine signalling networks.

Authors:  Bernard A Liu; Piers D Nash
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-09-19       Impact factor: 6.237

9.  Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity.

Authors:  Jeffrey H Ringrose; Henk W P van den Toorn; Michael Eitel; Harm Post; Pieter Neerincx; Bernd Schierwater; A F Maarten Altelaar; Albert J R Heck
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data.

Authors:  Regev Schweiger; Michal Linial
Journal:  Biol Direct       Date:  2010-01-26       Impact factor: 4.540

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.