Literature DB >> 29544874

Homing in: Mechanisms of Substrate Targeting by Protein Kinases.

Chad J Miller1, Benjamin E Turk2.   

Abstract

Protein phosphorylation is the most common reversible post-translational modification in eukaryotes. Humans have over 500 protein kinases, of which more than a dozen are established targets for anticancer drugs. All kinases share a structurally similar catalytic domain, yet each one is uniquely positioned within signaling networks controlling essentially all aspects of cell behavior. Kinases are distinguished from one another based on their modes of regulation and their substrate repertoires. Coupling specific inputs to the proper signaling outputs requires that kinases phosphorylate a limited number of sites to the exclusion of hundreds of thousands of off-target phosphorylation sites. Here, we review recent progress in understanding mechanisms of kinase substrate specificity and how they function to shape cellular signaling networks.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  enzyme specificity; linear sequence motif; protein interactions; protein kinase; protein phosphorylation

Mesh:

Substances:

Year:  2018        PMID: 29544874      PMCID: PMC5923429          DOI: 10.1016/j.tibs.2018.02.009

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  94 in total

1.  Mechanisms of MAPK signalling specificity.

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2.  Cushing's syndrome mutant PKAL205R exhibits altered substrate specificity.

Authors:  Joshua M Lubner; Kimberly L Dodge-Kafka; Cathrine R Carlson; George M Church; Michael F Chou; Daniel Schwartz
Journal:  FEBS Lett       Date:  2017-02-03       Impact factor: 4.124

3.  Distinct structural mechanisms determine substrate affinity and kinase activity of protein kinase Cα.

Authors:  Sangbae Lee; Titu Devamani; Hyun Deok Song; Manbir Sandhu; Adrien Larsen; Ruth Sommese; Abhinandan Jain; Nagarajan Vaidehi; Sivaraj Sivaramakrishnan
Journal:  J Biol Chem       Date:  2017-08-15       Impact factor: 5.157

4.  Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs.

Authors:  Janine Mok; Philip M Kim; Hugo Y K Lam; Stacy Piccirillo; Xiuqiong Zhou; Grace R Jeschke; Douglas L Sheridan; Sirlester A Parker; Ved Desai; Miri Jwa; Elisabetta Cameroni; Hengyao Niu; Matthew Good; Attila Remenyi; Jia-Lin Nianhan Ma; Yi-Jun Sheu; Holly E Sassi; Richelle Sopko; Clarence S M Chan; Claudio De Virgilio; Nancy M Hollingsworth; Wendell A Lim; David F Stern; Bruce Stillman; Brenda J Andrews; Mark B Gerstein; Michael Snyder; Benjamin E Turk
Journal:  Sci Signal       Date:  2010-02-16       Impact factor: 8.192

5.  A docking interface in the cyclin Cln2 promotes multi-site phosphorylation of substrates and timely cell-cycle entry.

Authors:  Samyabrata Bhaduri; Ervin Valk; Matthew J Winters; Brian Gruessner; Mart Loog; Peter M Pryciak
Journal:  Curr Biol       Date:  2015-01-22       Impact factor: 10.834

6.  Profiling the substrate specificity of protein kinases by on-bead screening of peptide libraries.

Authors:  Thi B Trinh; Qing Xiao; Dehua Pei
Journal:  Biochemistry       Date:  2013-07-24       Impact factor: 3.162

7.  Multistep phosphorylation systems: tunable components of biological signaling circuits.

Authors:  Evin Valk; Rainis Venta; Mihkel Ord; Ilona Faustova; Mardo Kõivomägi; Mart Loog
Journal:  Mol Biol Cell       Date:  2014-11-05       Impact factor: 4.138

8.  PP2ACdc55 Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation.

Authors:  Molly Godfrey; Sandra A Touati; Meghna Kataria; Andrew Jones; Ambrosius P Snijders; Frank Uhlmann
Journal:  Mol Cell       Date:  2017-01-26       Impact factor: 17.970

9.  Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays.

Authors:  Yang Deng; Nilda L Alicea-Velázquez; Ludovic Bannwarth; Soili I Lehtonen; Titus J Boggon; Heung-Chin Cheng; Vesa P Hytönen; Benjamin E Turk
Journal:  J Proteome Res       Date:  2014-08-28       Impact factor: 4.466

10.  Structural basis for the recognition of c-Src by its inactivator Csk.

Authors:  Nicholas M Levinson; Markus A Seeliger; Philip A Cole; John Kuriyan
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

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  49 in total

Review 1.  cAMP regulation of protein phosphatases PP1 and PP2A in brain.

Authors:  Shannon N Leslie; Angus C Nairn
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2018-09-18       Impact factor: 4.739

2.  Selection and optimization of enzyme reporters for chemical cytometry.

Authors:  Angela Proctor; Qunzhao Wang; David S Lawrence; Nancy L Allbritton
Journal:  Methods Enzymol       Date:  2019-03-23       Impact factor: 1.600

3.  Structural Basis for MARK1 Kinase Autoinhibition by Its KA1 Domain.

Authors:  Ryan P Emptage; Mark A Lemmon; Kathryn M Ferguson; Ronen Marmorstein
Journal:  Structure       Date:  2018-06-28       Impact factor: 5.006

4.  A Tale of Two Tyrosines.

Authors:  Robert B Best
Journal:  Biophys J       Date:  2020-10-14       Impact factor: 4.033

5.  Comprehensive Analysis of G1 Cyclin Docking Motif Sequences that Control CDK Regulatory Potency In Vivo.

Authors:  Sushobhana Bandyopadhyay; Samyabrata Bhaduri; Mihkel Örd; Norman E Davey; Mart Loog; Peter M Pryciak
Journal:  Curr Biol       Date:  2020-09-24       Impact factor: 10.834

6.  Intrinsically disordered linkers control tethered kinases via effective concentration.

Authors:  Mateusz Dyla; Magnus Kjaergaard
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-18       Impact factor: 11.205

7.  The crystal structure of the protein kinase HIPK2 reveals a unique architecture of its CMGC-insert region.

Authors:  Christopher Agnew; Lijun Liu; Shu Liu; Wei Xu; Liang You; Wayland Yeung; Natarajan Kannan; David Jablons; Natalia Jura
Journal:  J Biol Chem       Date:  2019-07-24       Impact factor: 5.157

8.  Multisite Phosphorylation of S6K1 Directs a Kinase Phospho-code that Determines Substrate Selection.

Authors:  Abul Arif; Jie Jia; Belinda Willard; Xiaoxia Li; Paul L Fox
Journal:  Mol Cell       Date:  2019-01-03       Impact factor: 17.970

Review 9.  Disordered Protein Kinase Regions in Regulation of Kinase Domain Cores.

Authors:  Gergő Gógl; Alexandr P Kornev; Attila Reményi; Susan S Taylor
Journal:  Trends Biochem Sci       Date:  2019-01-02       Impact factor: 13.807

10.  Recognition of physiological phosphorylation sites by p21-activated kinase 4.

Authors:  Ashwin K Chetty; Joel A Sexton; Byung Hak Ha; Benjamin E Turk; Titus J Boggon
Journal:  J Struct Biol       Date:  2020-06-23       Impact factor: 2.867

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