Literature DB >> 22889907

Evolution of SH2 domains and phosphotyrosine signalling networks.

Bernard A Liu1, Piers D Nash.   

Abstract

Src homology 2 (SH2) domains mediate selective protein-protein interactions with tyrosine phosphorylated proteins, and in doing so define specificity of phosphotyrosine (pTyr) signalling networks. SH2 domains and protein-tyrosine phosphatases expand alongside protein-tyrosine kinases (PTKs) to coordinate cellular and organismal complexity in the evolution of the unikont branch of the eukaryotes. Examination of conserved families of PTKs and SH2 domain proteins provides fiduciary marks that trace the evolutionary landscape for the development of complex cellular systems in the proto-metazoan and metazoan lineages. The evolutionary provenance of conserved SH2 and PTK families reveals the mechanisms by which diversity is achieved through adaptations in tissue-specific gene transcription, altered ligand binding, insertions of linear motifs and the gain or loss of domains following gene duplication. We discuss mechanisms by which pTyr-mediated signalling networks evolve through the development of novel and expanded families of SH2 domain proteins and the elaboration of connections between pTyr-signalling proteins. These changes underlie the variety of general and specific signalling networks that give rise to tissue-specific functions and increasingly complex developmental programmes. Examination of SH2 domains from an evolutionary perspective provides insight into the process by which evolutionary expansion and modification of molecular protein interaction domain proteins permits the development of novel protein-interaction networks and accommodates adaptation of signalling networks.

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Year:  2012        PMID: 22889907      PMCID: PMC3415846          DOI: 10.1098/rstb.2012.0107

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  110 in total

1.  An SH2-domain-containing kinase negatively regulates the phosphatidylinositol-3 kinase pathway.

Authors:  J Moniakis; S Funamoto; M Fukuzawa; J Meisenhelder; T Araki; T Abe; R Meili; T Hunter; J Williams; R A Firtel
Journal:  Genes Dev       Date:  2001-03-15       Impact factor: 11.361

2.  The ShcA phosphotyrosine docking protein sensitizes cardiovascular signaling in the mouse embryo.

Authors:  K M Lai; T Pawson
Journal:  Genes Dev       Date:  2000-05-01       Impact factor: 11.361

3.  Requirement for the SLP-76 adaptor GADS in T cell development.

Authors:  J Yoder; C Pham; Y M Iizuka; O Kanagawa; S K Liu; J McGlade; A M Cheng
Journal:  Science       Date:  2001-03-09       Impact factor: 47.728

4.  The evolutionary fate and consequences of duplicate genes.

Authors:  M Lynch; J S Conery
Journal:  Science       Date:  2000-11-10       Impact factor: 47.728

5.  Nck adaptors are positive regulators of the size and sensitivity of the T-cell repertoire.

Authors:  Edwige Roy; Dieudonnée Togbe; Amy D Holdorf; Dmitry Trubetskoy; Sabrina Nabti; Günter Küblbeck; Alexandra Klevenz; Annette Kopp-Schneider; Frank Leithäuser; Peter Möller; Friedhelm Bladt; Günter Hämmerling; Bernd Arnold; Tony Pawson; Anna Tafuri
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-13       Impact factor: 11.205

6.  Loops govern SH2 domain specificity by controlling access to binding pockets.

Authors:  Tomonori Kaneko; Haiming Huang; Bing Zhao; Lei Li; Huadong Liu; Courtney K Voss; Chenggang Wu; Martin R Schiller; Shawn Shun-Cheng Li
Journal:  Sci Signal       Date:  2010-05-04       Impact factor: 8.192

7.  Two novel Src homology 2 domain proteins interact to regulate dictyostelium gene expression during growth and early development.

Authors:  Christopher Sugden; Susan Ross; Gareth Bloomfield; Alasdair Ivens; Jason Skelton; Annette Mueller-Taubenberger; Jeffrey G Williams
Journal:  J Biol Chem       Date:  2010-05-10       Impact factor: 5.157

Review 8.  A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage.

Authors:  Jannik N Andersen; Peter G Jansen; Søren M Echwald; Ole H Mortensen; Toshiyuki Fukada; Robert Del Vecchio; Nicholas K Tonks; Niels Peter H Møller
Journal:  FASEB J       Date:  2004-01       Impact factor: 5.191

Review 9.  Designing customized cell signalling circuits.

Authors:  Wendell A Lim
Journal:  Nat Rev Mol Cell Biol       Date:  2010-05-19       Impact factor: 94.444

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  36 in total

Review 1.  Evolution and tinkering: what do a protein kinase, a transcriptional regulator and chromosome segregation/cell division proteins have in common?

Authors:  Abderahmane Derouiche; Lei Shi; Aida Kalantari; Ivan Mijakovic
Journal:  Curr Genet       Date:  2015-08-19       Impact factor: 3.886

2.  Tyrosine Phosphorylation of CD2AP Affects Stability of the Slit Diaphragm Complex.

Authors:  Irini Tossidou; Beina Teng; Kirstin Worthmann; Janina Müller-Deile; Tilman Jobst-Schwan; Christian Kardinal; Patricia Schroder; Patricia Bolanos-Palmieri; Hermann Haller; Jonas Willerding; Dana M Drost; Laura de Jonge; Thomas Reubold; Susanne Eschenburg; Ruth I Johnson; Mario Schiffer
Journal:  J Am Soc Nephrol       Date:  2019-06-24       Impact factor: 10.121

3.  DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.

Authors:  Pascal Schläpfer; Devang Mehta; Cameron Ridderikhoff; R Glen Uhrig
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

Review 4.  RNA polymerase II C-terminal domain: Tethering transcription to transcript and template.

Authors:  Jeffry L Corden
Journal:  Chem Rev       Date:  2013-09-16       Impact factor: 60.622

5.  SH2 Domains Serve as Lipid-Binding Modules for pTyr-Signaling Proteins.

Authors:  Mi-Jeong Park; Ren Sheng; Antonina Silkov; Da-Jung Jung; Zhi-Gang Wang; Yao Xin; Hyunjin Kim; Pallavi Thiagarajan-Rosenkranz; Seohyeon Song; Youngdae Yoon; Wonhee Nam; Ilshin Kim; Eui Kim; Dong-Gyu Lee; Yong Chen; Indira Singaram; Li Wang; Myoung Ho Jang; Cheol-Sang Hwang; Barry Honig; Sungho Ryu; Justin Lorieau; You-Me Kim; Wonhwa Cho
Journal:  Mol Cell       Date:  2016-03-24       Impact factor: 17.970

6.  Src homology 2 domain containing protein 5 (SH2D5) binds the breakpoint cluster region protein, BCR, and regulates levels of Rac1-GTP.

Authors:  Elizabeth J Gray; Evangelia Petsalaki; D Andrew James; Richard D Bagshaw; Melissa M Stacey; Oliver Rocks; Anne-Claude Gingras; Tony Pawson
Journal:  J Biol Chem       Date:  2014-10-20       Impact factor: 5.157

7.  Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks.

Authors:  Mark Grimes; Benjamin Hall; Lauren Foltz; Tyler Levy; Klarisa Rikova; Jeremiah Gaiser; William Cook; Ekaterina Smirnova; Travis Wheeler; Neil R Clark; Alexander Lachmann; Bin Zhang; Peter Hornbeck; Avi Ma'ayan; Michael Comb
Journal:  Sci Signal       Date:  2018-05-22       Impact factor: 8.192

8.  Engineered SH2 domains with tailored specificities and enhanced affinities for phosphoproteome analysis.

Authors:  Gianluca Veggiani; Haiming Huang; Bradley P Yates; Jiefei Tong; Tomonori Kaneko; Rakesh Joshi; Shawn S C Li; Michael F Moran; Gerald Gish; Sachdev S Sidhu
Journal:  Protein Sci       Date:  2018-12-24       Impact factor: 6.725

9.  Hepatitis B virus X protein-induced SH2 domain-containing 5 (SH2D5) expression promotes hepatoma cell growth via an SH2D5-transketolase interaction.

Authors:  Yongfa Zheng; Pingpo Ming; Chengliang Zhu; Yu Si; Shilei Xu; Aidong Chen; Jun Wang; Binghong Zhang
Journal:  J Biol Chem       Date:  2019-01-18       Impact factor: 5.157

Review 10.  SRC-family tyrosine kinases in oogenesis, oocyte maturation and fertilization: an evolutionary perspective.

Authors:  William H Kinsey
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

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