Literature DB >> 19577666

The protein-solvent glass transition.

Wolfgang Doster1.   

Abstract

The protein dynamical transition and its connection with the liquid-glass transition (GT) of hydration water and aqueous solvents are reviewed. The protein solvation shell exhibits a regular glass transition, characterized by steps in the specific heat and the thermal expansion coefficient at the calorimetric glass temperature T(G) approximately 170 K. It implies that the time scale of the structural alpha-relaxation has reached the experimental time window of 1-100 s. The protein dynamical transition, identified from elastic neutron scattering experiments by enhanced amplitudes of molecular motions exceeding the vibrational level, probes the alpha-process on a shorter time scale. The corresponding liquid-glass transition occurs at higher temperatures, typically 240 K. The GT is generally associated with diverging viscosities, the freezing of long-range translational diffusion in the supercooled liquid. Due to mutual hydrogen bonding, both, protein- and solvent relaxational degrees of freedom slow down in paralleled near the GT. However, the freezing of protein motions, where surface-coupled rotational and librational degrees of freedom are arrested, is better characterized as a rubber-glass transition. In contrast, internal protein modes such as the rotation of side chains are not affected. Moreover, ligand binding experiments with myoglobin in various glass-forming solvents show, that only ligand entry and exit rates depend on the local viscosity near the protein surface, but protein-internal ligand migration is not coupled to the solvent. The GT leads to structural arrest on a macroscopic scale due to the microscopic cage effect on the scale of the intermolecular distance. Mode coupling theory provides a theoretical framework to understand the microscopic nature of the GT even in complex systems. The role of the alpha- and beta-process in the dynamics of protein hydration water is evaluated. The protein-solvent GT is triggered by hydrogen bond fluctuations, which give rise to fast beta-processes. High-frequency neutron scattering spectra indicate increasing hydrogen bond braking above T(G).

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Year:  2009        PMID: 19577666     DOI: 10.1016/j.bbapap.2009.06.019

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  26 in total

1.  Protein dynamical transition at 110 K.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

2.  Solvent effect on librational dynamics of spin-labelled haemoglobin by ED- and CW-EPR.

Authors:  Francesco Scarpelli; Rosa Bartucci; Luigi Sportelli; Rita Guzzi
Journal:  Eur Biophys J       Date:  2010-11-25       Impact factor: 1.733

3.  Cryogenic solid state NMR studies of fibrils of the Alzheimer's disease amyloid-β peptide: perspectives for DNP.

Authors:  Juan-Miguel Lopez del Amo; Dennis Schneider; Antoine Loquet; Adam Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2013-06-22       Impact factor: 2.835

4.  Molecular Dynamics and NMR Shed Light on Motions Underpinning Dynamical Transitions in Biomolecules.

Authors:  Lennart Nilsson
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

5.  Understanding the role of hydrogen bonds in water dynamics and protein stability.

Authors:  Valentino Bianco; Svilen Iskrov; Giancarlo Franzese
Journal:  J Biol Phys       Date:  2011-10-01       Impact factor: 1.365

6.  Dynamics of protein and its hydration water: neutron scattering studies on fully deuterated GFP.

Authors:  Jonathan D Nickels; Hugh O'Neill; Liang Hong; Madhusudan Tyagi; Georg Ehlers; Kevin L Weiss; Qiu Zhang; Zheng Yi; Eugene Mamontov; Jeremy C Smith; Alexei P Sokolov
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

7.  Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate.

Authors:  Stefan Stoll; Young-Tae Lee; Mo Zhang; Richard F Wilson; R David Britt; David B Goodin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

8.  Low-temperature polymorphic phase transition in a crystalline tripeptide L-Ala-L-Pro-Gly·H2O revealed by adiabatic calorimetry.

Authors:  Alexey V Markin; Evgeny Markhasin; Semen S Sologubov; Qing Zhe Ni; Natalia N Smirnova; Robert G Griffin
Journal:  J Phys Chem B       Date:  2015-01-27       Impact factor: 2.991

9.  Solvent flows, conformation changes and lattice reordering in a cold protein crystal.

Authors:  David W Moreau; Hakan Atakisi; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-31       Impact factor: 7.652

10.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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