Literature DB >> 22826259

Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate.

Stefan Stoll1, Young-Tae Lee, Mo Zhang, Richard F Wilson, R David Britt, David B Goodin.   

Abstract

Although cytochrome P450cam from Pseudomonas putida, the archetype for all heme monooxygenases, has long been known to have a closed active site, recent reports show that the enzyme can also be crystallized in at least two clusters of open conformations. This suggests that the enzyme may undergo significant conformational changes during substrate binding and catalytic turnover. However, these conformations were observed in the crystalline state, and information is needed about the conformations that are populated in solution. In this study, double electron-electron resonance experiments were performed to observe substrate-induced changes in distance as measured by the dipolar coupling between spin labels introduced onto the surface of the enzyme on opposite sides of the substrate access channel. The double electron-electron resonance data show a decrease of 0.8 nm in the distance between spin labels placed at S48C and S190C upon binding the substrate camphor. A rotamer distribution model based on the crystal structures adequately describes the observed distance distributions. These results demonstrate conclusively that, in the physiologically relevant solution state, the substrate-free enzyme exists in the open P450cam-O conformation and that camphor binding results in conversion to the closed P450cam-C form. This approach should be useful for investigating many other P450s, including mammalian forms, in which the role of conformational change is of central importance but not well understood.

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Year:  2012        PMID: 22826259      PMCID: PMC3420169          DOI: 10.1073/pnas.1207123109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Crystal structure of a thermophilic cytochrome P450 from the archaeon Sulfolobus solfataricus.

Authors:  J K Yano; L S Koo; D J Schuller; H Li; P R Ortiz de Montellano; T L Poulos
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

2.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

Authors:  Stefan Stoll; Arthur Schweiger
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

3.  Investigating the structural plasticity of a cytochrome P450: three-dimensional structures of P450 EryK and binding to its physiological substrate.

Authors:  Carmelinda Savino; Linda C Montemiglio; Giuliano Sciara; Adriana E Miele; Steven G Kendrew; Per Jemth; Stefano Gianni; Beatrice Vallone
Journal:  J Biol Chem       Date:  2009-07-22       Impact factor: 5.157

4.  Structural information from orientationally selective DEER spectroscopy.

Authors:  J E Lovett; A M Bowen; C R Timmel; M W Jones; J R Dilworth; D Caprotti; S G Bell; L L Wong; J Harmer
Journal:  Phys Chem Chem Phys       Date:  2009-07-02       Impact factor: 3.676

5.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

6.  Solution structural ensembles of substrate-free cytochrome P450(cam).

Authors:  Eliana K Asciutto; Matthew J Young; Jeffry Madura; Susan Sondej Pochapsky; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2012-04-10       Impact factor: 3.162

7.  The catalytic pathway of cytochrome p450cam at atomic resolution.

Authors:  I Schlichting; J Berendzen; K Chu; A M Stock; S A Maves; D E Benson; R M Sweet; D Ringe; G A Petsko; S G Sligar
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

8.  The cytochrome p450 homepage.

Authors:  David R Nelson
Journal:  Hum Genomics       Date:  2009-10       Impact factor: 4.639

Review 9.  Hydrocarbon hydroxylation by cytochrome P450 enzymes.

Authors:  Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

10.  Thermodynamic fidelity of the mammalian cytochrome P450 2B4 active site in binding substrates and inhibitors.

Authors:  B K Muralidhara; Ling Sun; Surendra Negi; James R Halpert
Journal:  J Mol Biol       Date:  2008-01-05       Impact factor: 5.469

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  17 in total

1.  The dynamics of camphor in the cytochrome P450 CYP101D2.

Authors:  Shabana Vohra; Maria Musgaard; Stephen G Bell; Luet-Lok Wong; Weihong Zhou; Philip C Biggin
Journal:  Protein Sci       Date:  2013-08-12       Impact factor: 6.725

2.  Coupling Oxygen Consumption with Hydrocarbon Oxidation in Bacterial Multicomponent Monooxygenases.

Authors:  Weixue Wang; Alexandria D Liang; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2015-08-21       Impact factor: 22.384

Review 3.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

4.  Investigating the position of the hairpin loop in New Delhi metallo-β-lactamase, NDM-1, during catalysis and inhibitor binding.

Authors:  Mahesh Aitha; Abraham J Moller; Indra D Sahu; Masaki Horitani; David L Tierney; Michael W Crowder
Journal:  J Inorg Biochem       Date:  2015-10-22       Impact factor: 4.155

5.  The conformation of P450cam in complex with putidaredoxin is dependent on oxidation state.

Authors:  William K Myers; Young-Tae Lee; R David Britt; David B Goodin
Journal:  J Am Chem Soc       Date:  2013-08-05       Impact factor: 15.419

6.  Conformational Response of N-Terminally Truncated Cytochrome P450 3A4 to Ligand Binding in Solution.

Authors:  Shih-Wei Chuo; Shu-Hao Liou; Lee-Ping Wang; R David Britt; Thomas L Poulos; Irina F Sevrioukova; David B Goodin
Journal:  Biochemistry       Date:  2019-09-06       Impact factor: 3.162

7.  P450cin active site water: implications for substrate binding and solvent accessibility.

Authors:  Yarrow Madrona; Scott A Hollingsworth; Bushra Khan; Thomas L Poulos
Journal:  Biochemistry       Date:  2013-07-18       Impact factor: 3.162

8.  Conformational Heterogeneity and the Affinity of Substrate Molecular Recognition by Cytochrome P450cam.

Authors:  Edward J Basom; Bryce A Manifold; Megan C Thielges
Journal:  Biochemistry       Date:  2017-06-14       Impact factor: 3.162

9.  An Intermediate Conformational State of Cytochrome P450cam-CN in Complex with Putidaredoxin.

Authors:  Shih-Wei Chuo; Lee-Ping Wang; R David Britt; David B Goodin
Journal:  Biochemistry       Date:  2019-04-26       Impact factor: 3.162

10.  Structural Study of a Flexible Active Site Loop in Human Indoleamine 2,3-Dioxygenase and Its Functional Implications.

Authors:  Lucía Álvarez; Ariel Lewis-Ballester; Adrián Roitberg; Darío A Estrin; Syun-Ru Yeh; Marcelo A Marti; Luciana Capece
Journal:  Biochemistry       Date:  2016-05-06       Impact factor: 3.162

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