Literature DB >> 23277668

Understanding the role of hydrogen bonds in water dynamics and protein stability.

Valentino Bianco1, Svilen Iskrov, Giancarlo Franzese.   

Abstract

The mechanisms of cold and pressure denaturation of proteins are a matter of debate, but it is commonly accepted that water plays a fundamental role in the process. It has been proposed that the denaturation process is related to an increase of hydrogen bonds among hydration water molecules. Other theories suggest that the causes of denaturation are the density fluctuations of surface water, or the destabilization of hydrophobic contacts as a consequence of water molecule inclusions inside the protein, especially at high pressures. We review some theories that have been proposed to give insight into this problem, and we describe a coarse-grained model of water that compares well with experiments for proteins' hydration water. We introduce its extension for a homopolymer in contact with the water monolayer and study it by Monte Carlo simulations in an attempt to understand how the interplay of water cooperativity and interfacial hydrogen bonds affects protein stability.

Entities:  

Keywords:  Biological interfaces; Confined water; Hydrated proteins; Protein denaturation; Water

Year:  2011        PMID: 23277668      PMCID: PMC3285729          DOI: 10.1007/s10867-011-9235-7

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  53 in total

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Authors:  Pradeep Kumar; Sergey V Buldyrev; Francis W Starr; Nicolas Giovambattista; H Eugene Stanley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-11-11

6.  Insights into phases of liquid water from study of its unusual glass-forming properties.

Authors:  C Austen Angell
Journal:  Science       Date:  2008-02-01       Impact factor: 47.728

7.  Effect of hydrogen bond cooperativity on the behavior of water.

Authors:  Kevin Stokely; Marco G Mazza; H Eugene Stanley; Giancarlo Franzese
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-08       Impact factor: 11.205

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Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-06

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Authors:  D P Nash; J Jonas
Journal:  Biochem Biophys Res Commun       Date:  1997-09-18       Impact factor: 3.575

10.  Unbiased cold denaturation: low- and high-temperature unfolding of yeast frataxin under physiological conditions.

Authors:  Annalisa Pastore; Stephen R Martin; Anastasia Politou; Kalyan C Kondapalli; Timothy Stemmler; Piero A Temussi
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

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  7 in total

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Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

2.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

3.  Structure and activity of a thermally stable mutant of Acanthamoeba actophorin.

Authors:  Stephen Quirk; Raquel L Lieberman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-03-28       Impact factor: 1.056

Review 4.  Protein folding and surface interaction phase diagrams in vitro and in cells.

Authors:  Martin Gruebele
Journal:  FEBS Lett       Date:  2021-03-27       Impact factor: 4.124

5.  A facile process for soak-and-peel delamination of CVD graphene from substrates using water.

Authors:  Priti Gupta; Pratiksha D Dongare; Sameer Grover; Sudipta Dubey; Hitesh Mamgain; Arnab Bhattacharya; Mandar M Deshmukh
Journal:  Sci Rep       Date:  2014-01-24       Impact factor: 4.379

6.  Protein Unfolding and Aggregation near a Hydrophobic Interface.

Authors:  David March; Valentino Bianco; Giancarlo Franzese
Journal:  Polymers (Basel)       Date:  2021-01-03       Impact factor: 4.329

7.  Critical behavior of a water monolayer under hydrophobic confinement.

Authors:  Valentino Bianco; Giancarlo Franzese
Journal:  Sci Rep       Date:  2014-04-04       Impact factor: 4.379

  7 in total

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