Literature DB >> 19523905

Simulations of membrane tubulation by lattices of amphiphysin N-BAR domains.

Ying Yin1, Anton Arkhipov, Klaus Schulten.   

Abstract

Membrane compartments of manifold shapes are found in cells, often sculpted by cellular proteins. In particular, proteins of the BAR domain superfamily participate in membrane-sculpting processes in vivo and reshape also in vitro low-curvature membrane liposomes into high-curvature tubes and vesicles. Here we show by means of computer simulations totaling over 1 millisecond, how lattices involving parallel rows of amphiphysin N-BAR domains sculpt flat membranes into tubes. A highly detailed, dynamic picture of the 100-microsecond formation of membrane tubes by lattices of N-BAR domains is obtained. Lattice types inducing a wide range of membrane curvatures, with radii approximately 15-100 nm, are explored. The results suggest that multiple lattice types are viable for efficient membrane bending.

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Year:  2009        PMID: 19523905      PMCID: PMC2743466          DOI: 10.1016/j.str.2009.03.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  38 in total

Review 1.  Membrane curvature: how BAR domains bend bilayers.

Authors:  Joshua Zimmerberg; Stuart McLaughlin
Journal:  Curr Biol       Date:  2004-03-23       Impact factor: 10.834

Review 2.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

Review 3.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

4.  Stability and dynamics of virus capsids described by coarse-grained modeling.

Authors:  Anton Arkhipov; Peter L Freddolino; Klaus Schulten
Journal:  Structure       Date:  2006-12       Impact factor: 5.006

Review 5.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

6.  A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers.

Authors:  Vagelis A Harmandaris; Markus Deserno
Journal:  J Chem Phys       Date:  2006-11-28       Impact factor: 3.488

7.  Coarse grained protein-lipid model with application to lipoprotein particles.

Authors:  Amy Y Shih; Anton Arkhipov; Peter L Freddolino; Klaus Schulten
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

8.  Structure and dynamics of helix-0 of the N-BAR domain in lipid micelles and bilayers.

Authors:  Christian Löw; Ulrich Weininger; Hwankyu Lee; Kristian Schweimer; Ines Neundorf; Annette G Beck-Sickinger; Richard W Pastor; Jochen Balbach
Journal:  Biophys J       Date:  2008-07-25       Impact factor: 4.033

Review 9.  The BAR domain proteins: molding membranes in fission, fusion, and phagy.

Authors:  Gang Ren; Parimala Vajjhala; Janet S Lee; Barbara Winsor; Alan L Munn
Journal:  Microbiol Mol Biol Rev       Date:  2006-03       Impact factor: 11.056

10.  Structural basis of filopodia formation induced by the IRSp53/MIM homology domain of human IRSp53.

Authors:  Thomas H Millard; Guillaume Bompard; Man Yeung Heung; Timothy R Dafforn; David J Scott; Laura M Machesky; Klaus Fütterer
Journal:  EMBO J       Date:  2005-01-06       Impact factor: 11.598

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  66 in total

1.  Direct simulation of protein-mediated vesicle fusion: lung surfactant protein B.

Authors:  Svetlana Baoukina; D Peter Tieleman
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Nature of curvature coupling of amphiphysin with membranes depends on its bound density.

Authors:  Benoît Sorre; Andrew Callan-Jones; John Manzi; Bruno Goud; Jacques Prost; Patricia Bassereau; Aurélien Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-19       Impact factor: 11.205

3.  Roles of amphipathic helices and the bin/amphiphysin/rvs (BAR) domain of endophilin in membrane curvature generation.

Authors:  Christine C Jao; Balachandra G Hegde; Jennifer L Gallop; Prabhavati B Hegde; Harvey T McMahon; Ian S Haworth; Ralf Langen
Journal:  J Biol Chem       Date:  2010-04-23       Impact factor: 5.157

4.  Multiple modes of endophilin-mediated conversion of lipid vesicles into coated tubes: implications for synaptic endocytosis.

Authors:  Naoko Mizuno; Christine C Jao; Ralf Langen; Alasdair C Steven
Journal:  J Biol Chem       Date:  2010-05-18       Impact factor: 5.157

Review 5.  BAR domain competition during directional cellular migration.

Authors:  Gabriel A Quiñones; Anthony E Oro
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

6.  Application of a free-energy-landscape approach to study tension-dependent bilayer tubulation mediated by curvature-inducing proteins.

Authors:  Richard W Tourdot; N Ramakrishnan; Tobias Baumgart; Ravi Radhakrishnan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-10-29

7.  Linear aggregation of proteins on the membrane as a prelude to membrane remodeling.

Authors:  Mijo Simunovic; Anand Srivastava; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-27       Impact factor: 11.205

8.  Amphipathic motifs in BAR domains are essential for membrane curvature sensing.

Authors:  Vikram K Bhatia; Kenneth L Madsen; Pierre-Yves Bolinger; Andreas Kunding; Per Hedegård; Ulrik Gether; Dimitrios Stamou
Journal:  EMBO J       Date:  2009-10-08       Impact factor: 11.598

9.  The N-Terminal Amphipathic Helix of Endophilin Does Not Contribute to Its Molecular Curvature Generation Capacity.

Authors:  Zhiming Chen; Chen Zhu; Curtis J Kuo; Jaclyn Robustelli; Tobias Baumgart
Journal:  J Am Chem Soc       Date:  2016-10-28       Impact factor: 15.419

Review 10.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

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