Literature DB >> 26565280

Application of a free-energy-landscape approach to study tension-dependent bilayer tubulation mediated by curvature-inducing proteins.

Richard W Tourdot1, N Ramakrishnan2, Tobias Baumgart3, Ravi Radhakrishnan4.   

Abstract

We investigate the phenomenon of protein-induced tubulation of lipid bilayer membranes within a continuum framework using Monte Carlo simulations coupled with the Widom insertion technique to compute excess chemical potentials. Tubular morphologies are spontaneously formed when the density and the curvature-field strength of the membrane-bound proteins exceed their respective thresholds and this transition is marked by a sharp drop in the excess chemical potential. We find that the planar to tubular transition can be described by a micellar model and that the corresponding free-energy barrier increases with an increase in the curvature-field strength (i.e., of protein-membrane interactions) and also with an increase in membrane tension.

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Year:  2015        PMID: 26565280      PMCID: PMC4794322          DOI: 10.1103/PhysRevE.92.042715

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  49 in total

Review 1.  Dynamin and its role in membrane fission.

Authors:  J E Hinshaw
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

Review 2.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

Review 3.  Biophysical approaches to protein-induced membrane deformations in trafficking.

Authors:  Pierre Sens; Ludger Johannes; Patricia Bassereau
Journal:  Curr Opin Cell Biol       Date:  2008-06-06       Impact factor: 8.382

4.  Spontaneous tubulation of membranes and vesicles reveals membrane tension generated by spontaneous curvature.

Authors:  Reinhard Lipowsky
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

5.  Budding and vesiculation induced by conical membrane inclusions.

Authors:  Thorsten Auth; Gerhard Gompper
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-03

Review 6.  Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects.

Authors:  Frank L H Brown
Journal:  Q Rev Biophys       Date:  2011-07-01       Impact factor: 5.318

7.  Lipid cosorting mediated by shiga toxin induced tubulation.

Authors:  Mahassine Safouane; Ludwig Berland; Andrew Callan-Jones; Benoit Sorre; Winfried Römer; Ludger Johannes; Gilman E S Toombes; Patricia Bassereau
Journal:  Traffic       Date:  2010-09-30       Impact factor: 6.215

Review 8.  Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids.

Authors:  Tobias Baumgart; Benjamin R Capraro; Chen Zhu; Sovan L Das
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

Review 9.  Mechanisms shaping the membranes of cellular organelles.

Authors:  Yoko Shibata; Junjie Hu; Michael M Kozlov; Tom A Rapoport
Journal:  Annu Rev Cell Dev Biol       Date:  2009       Impact factor: 13.827

10.  Multiscale computational models in physical systems biology of intracellular trafficking.

Authors:  Richard W Tourdot; Ryan P Bradley; Natesan Ramakrishnan; Ravi Radhakrishnan
Journal:  IET Syst Biol       Date:  2014-10       Impact factor: 1.615

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  8 in total

1.  Emergent membrane morphologies in relaxed and tense membranes in presence of reversible adhesive pinning interactions.

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Journal:  Phys Biol       Date:  2019-10-21       Impact factor: 2.583

2.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

3.  Curvature-undulation coupling as a basis for curvature sensing and generation in bilayer membranes.

Authors:  Ryan P Bradley; Ravi Radhakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-16       Impact factor: 11.205

4.  Epsin N-terminal Homology Domain (ENTH) Activity as a Function of Membrane Tension.

Authors:  Martin Gleisner; Benjamin Kroppen; Christian Fricke; Nelli Teske; Torben-Tobias Kliesch; Andreas Janshoff; Michael Meinecke; Claudia Steinem
Journal:  J Biol Chem       Date:  2016-07-27       Impact factor: 5.157

5.  Biophysics of membrane curvature remodeling at molecular and mesoscopic lengthscales.

Authors:  N Ramakrishnan; Ryan P Bradley; Richard W Tourdot; Ravi Radhakrishnan
Journal:  J Phys Condens Matter       Date:  2018-05-22       Impact factor: 2.333

6.  Biophysical Considerations in the Rational Design and Cellular Targeting of Flexible Polymeric Nanoparticles.

Authors:  Samaneh Farokhirad; Sreeja Kutti Kandy; Andrew Tsourkas; Portonovo S Ayyaswamy; David M Eckmann; Ravi Radhakrishnan
Journal:  Adv Mater Interfaces       Date:  2021-11-11       Impact factor: 6.389

7.  Data driven and biophysical insights into the regulation of trafficking vesicles by extracellular matrix stiffness.

Authors:  Kshitiz Parihar; Jonathan Nukpezah; Daniel V Iwamoto; Paul A Janmey; Ravi Radhakrishnan
Journal:  iScience       Date:  2022-07-04

8.  Probing lipid membrane bending mechanics using gold nanorod tracking.

Authors:  Mehdi Molaei; Sreeja Kutti Kandy; Zachary T Graber; Tobias Baumgart; Ravi Radhakrishnan; John C Crocker
Journal:  Phys Rev Res       Date:  2022-03-07
  8 in total

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