Literature DB >> 18658220

Structure and dynamics of helix-0 of the N-BAR domain in lipid micelles and bilayers.

Christian Löw1, Ulrich Weininger, Hwankyu Lee, Kristian Schweimer, Ines Neundorf, Annette G Beck-Sickinger, Richard W Pastor, Jochen Balbach.   

Abstract

Bin/Amphiphysin/Rvs-homology (BAR) domains generate and sense membrane curvature by binding the negatively charged membrane to their positively charged concave surfaces. N-BAR domains contain an N-terminal extension (helix-0) predicted to form an amphipathic helix upon membrane binding. We determined the NMR structure and nano-to-picosecond dynamics of helix-0 of the human Bin1/Amphiphysin II BAR domain in sodium dodecyl sulfate and dodecylphosphocholine micelles. Molecular dynamics simulations of this 34-amino acid peptide revealed electrostatic and hydrophobic interactions with the detergent molecules that induce helical structure formation from residues 8-10 toward the C-terminus. The orientation in the micelles was experimentally confirmed by backbone amide proton exchange. The simulation and the experiment indicated that the N-terminal region is disordered, and the peptide curves to adopted the micelle shape. Deletion of helix-0 reduced tubulation of liposomes by the BAR domain, whereas the helix-0 peptide itself was fusogenic. These findings support models for membrane curving by BAR domains in which helix-0 increases the binding affinity to the membrane and enhances curvature generation.

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Year:  2008        PMID: 18658220      PMCID: PMC2567947          DOI: 10.1529/biophysj.108.134155

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

1.  BAR domains as sensors of membrane curvature: the amphiphysin BAR structure.

Authors:  Brian J Peter; Helen M Kent; Ian G Mills; Yvonne Vallis; P Jonathan G Butler; Philip R Evans; Harvey T McMahon
Journal:  Science       Date:  2003-11-26       Impact factor: 47.728

2.  ARIA: automated NOE assignment and NMR structure calculation.

Authors:  Jens P Linge; Michael Habeck; Wolfgang Rieping; Michael Nilges
Journal:  Bioinformatics       Date:  2003-01-22       Impact factor: 6.937

3.  Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.

Authors:  Alexander D Mackerell; Michael Feig; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-08       Impact factor: 3.376

4.  A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6.

Authors:  Chris Oostenbrink; Alessandra Villa; Alan E Mark; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

5.  Sar1p N-terminal helix initiates membrane curvature and completes the fission of a COPII vesicle.

Authors:  Marcus C S Lee; Lelio Orci; Susan Hamamoto; Eugene Futai; Mariella Ravazzola; Randy Schekman
Journal:  Cell       Date:  2005-08-26       Impact factor: 41.582

Review 6.  How proteins produce cellular membrane curvature.

Authors:  Joshua Zimmerberg; Michael M Kozlov
Journal:  Nat Rev Mol Cell Biol       Date:  2006-01       Impact factor: 94.444

Review 7.  Membrane curvature and mechanisms of dynamic cell membrane remodelling.

Authors:  Harvey T McMahon; Jennifer L Gallop
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

Review 8.  Amphiphysins: raising the BAR for synaptic vesicle recycling and membrane dynamics. Bin-Amphiphysin-Rvsp.

Authors:  Bing Zhang; Andrew C Zelhof
Journal:  Traffic       Date:  2002-07       Impact factor: 6.215

9.  RICH-1 has a BIN/Amphiphysin/Rvsp domain responsible for binding to membrane lipids and tubulation of liposomes.

Authors:  Ninna Richnau; Asa Fransson; Khashayar Farsad; Pontus Aspenström
Journal:  Biochem Biophys Res Commun       Date:  2004-07-30       Impact factor: 3.575

10.  Curvature of clathrin-coated pits driven by epsin.

Authors:  Marijn G J Ford; Ian G Mills; Brian J Peter; Yvonne Vallis; Gerrit J K Praefcke; Philip R Evans; Harvey T McMahon
Journal:  Nature       Date:  2002-09-26       Impact factor: 49.962

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  26 in total

1.  N-terminal amphipathic helix of Amphiphysin can change the spatial distribution of immunoglobulin E receptors (FcεRI) in the RBL-2H3 mast cell synapse.

Authors:  Kathrin Spendier
Journal:  Results Immunol       Date:  2015-12-03

2.  Membrane-bending mechanism of amphiphysin N-BAR domains.

Authors:  Anton Arkhipov; Ying Yin; Klaus Schulten
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

3.  Mechanism of membrane curvature sensing by amphipathic helix containing proteins.

Authors:  Haosheng Cui; Edward Lyman; Gregory A Voth
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

4.  Modeling Protein-Micelle Systems in Implicit Water.

Authors:  Rodney E Versace; Themis Lazaridis
Journal:  J Phys Chem B       Date:  2015-06-15       Impact factor: 2.991

Review 5.  Detergent-mediated protein aggregation.

Authors:  Chris Neale; Hamed Ghanei; John Holyoake; Russell E Bishop; Gilbert G Privé; Régis Pomès
Journal:  Chem Phys Lipids       Date:  2013-03-04       Impact factor: 3.329

6.  N-terminal α-helix-independent membrane interactions facilitate adenovirus protein VI induction of membrane tubule formation.

Authors:  Oana Maier; Christopher M Wiethoff
Journal:  Virology       Date:  2010-09-25       Impact factor: 3.616

7.  Endophilin B1/Bif-1 stimulates BAX activation independently from its capacity to produce large scale membrane morphological rearrangements.

Authors:  Aitor Etxebarria; Oihana Terrones; Hirohito Yamaguchi; Ane Landajuela; Olatz Landeta; Bruno Antonsson; Hong-Gang Wang; Gorka Basañez
Journal:  J Biol Chem       Date:  2008-12-11       Impact factor: 5.157

8.  The N-Terminal Amphipathic Helix of Endophilin Does Not Contribute to Its Molecular Curvature Generation Capacity.

Authors:  Zhiming Chen; Chen Zhu; Curtis J Kuo; Jaclyn Robustelli; Tobias Baumgart
Journal:  J Am Chem Soc       Date:  2016-10-28       Impact factor: 15.419

9.  Membrane Curvature-sensing and Curvature-inducing Activity of Islet Amyloid Polypeptide and Its Implications for Membrane Disruption.

Authors:  Natalie C Kegulian; Shalene Sankhagowit; Melania Apostolidou; Sajith A Jayasinghe; Noah Malmstadt; Peter C Butler; Ralf Langen
Journal:  J Biol Chem       Date:  2015-08-17       Impact factor: 5.157

Review 10.  Multiscale simulation of protein mediated membrane remodeling.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  Semin Cell Dev Biol       Date:  2009-11-13       Impact factor: 7.727

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