Literature DB >> 19518144

Chemoselective 15N tag for sensitive and high-resolution nuclear magnetic resonance profiling of the carboxyl-containing metabolome.

Tao Ye1, Huaping Mo, Narasimhamurthy Shanaiah, G A Nagana Gowda, Shucha Zhang, Daniel Raftery.   

Abstract

Metabolic profiling has received increasing recognition as an indispensable complement to genomics and proteomics for probing biological systems and for clinical applications. (1)H nuclear magnetic resonance (NMR) is widely used in the field but is challenged by spectral complexity and overlap. Improved and simple methods that quantitatively profile a large number of metabolites are sought to make further progress. Here, we demonstrate a simple isotope tagging strategy, in which metabolites with carboxyl groups are chemically tagged with (15)N-ethanolamine and detected using a 2D heteronuclear correlation NMR experiment. This method is capable of detecting over 100 metabolites at concentrations as low as a few micromolar in biological samples, both quantitatively and reproducibly. Carboxyl-containing compounds are found in almost all metabolic pathways, and thus this new approach should find a variety of applications.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19518144      PMCID: PMC2861042          DOI: 10.1021/ac900539y

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  30 in total

Review 1.  'Metabonomics': understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data.

Authors:  J K Nicholson; J C Lindon; E Holmes
Journal:  Xenobiotica       Date:  1999-11       Impact factor: 1.908

Review 2.  Metabolomics--the link between genotypes and phenotypes.

Authors:  Oliver Fiehn
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

3.  Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry.

Authors:  Hui Zhang; Xiao-Jun Li; Daniel B Martin; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

Review 4.  Capillary electrophoresis for short-chain organic acids and inorganic anions in different samples.

Authors:  Verónica Galli; Antonia García; Luis Saavedra; Coral Barbas
Journal:  Electrophoresis       Date:  2003-06       Impact factor: 3.535

Review 5.  Metabolite profiling: from diagnostics to systems biology.

Authors:  Alisdair R Fernie; Richard N Trethewey; Arno J Krotzky; Lothar Willmitzer
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

6.  Analysis of biological fluids using 600 MHz proton NMR spectroscopy: application of homonuclear two-dimensional J-resolved spectroscopy to urine and blood plasma for spectral simplification and assignment.

Authors:  P J Foxall; J A Parkinson; I H Sadler; J C Lindon; J K Nicholson
Journal:  J Pharm Biomed Anal       Date:  1993-01       Impact factor: 3.935

7.  Increase in signal-to-noise ratio of > 10,000 times in liquid-state NMR.

Authors:  Jan H Ardenkjaer-Larsen; Björn Fridlund; Andreas Gram; Georg Hansson; Lennart Hansson; Mathilde H Lerche; Rolf Servin; Mikkel Thaning; Klaes Golman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-20       Impact factor: 11.205

8.  Indirect covariance NMR spectroscopy.

Authors:  Fengli Zhang; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2004-10-20       Impact factor: 15.419

9.  Correlative and quantitative 1H NMR-based metabolomics reveals specific metabolic pathway disturbances in diabetic rats.

Authors:  Shucha Zhang; G A Nagana Gowda; Vincent Asiago; Narasimhamurthy Shanaiah; Coral Barbas; Daniel Raftery
Journal:  Anal Biochem       Date:  2008-08-20       Impact factor: 3.365

Review 10.  Metabolomics and systems biology: making sense of the soup.

Authors:  Douglas B Kell
Journal:  Curr Opin Microbiol       Date:  2004-06       Impact factor: 7.934

View more
  23 in total

1.  Use of optimized 1D TOCSY NMR for improved quantitation and metabolomic analysis of biofluids.

Authors:  Peter Sandusky; Emmanuel Appiah-Amponsah; Daniel Raftery
Journal:  J Biomol NMR       Date:  2011-03-10       Impact factor: 2.835

2.  Quantitative analysis of blood plasma metabolites using isotope enhanced NMR methods.

Authors:  G A Nagana Gowda; Fariba Tayyari; Tao Ye; Yuliana Suryani; Siwei Wei; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Anal Chem       Date:  2010-09-29       Impact factor: 6.986

Review 3.  Can NMR solve some significant challenges in metabolomics?

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  J Magn Reson       Date:  2015-08-18       Impact factor: 2.229

Review 4.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

Review 5.  Advances in NMR-based biofluid analysis and metabolite profiling.

Authors:  Shucha Zhang; G A Nagana Gowda; Tao Ye; Daniel Raftery
Journal:  Analyst       Date:  2010-04-09       Impact factor: 4.616

6.  13C-formylation for improved nuclear magnetic resonance profiling of amino metabolites in biofluids.

Authors:  Tao Ye; Shucha Zhang; Huaping Mo; Fariba Tayyari; G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2010-03-15       Impact factor: 6.986

Review 7.  Isotope enhanced approaches in metabolomics.

Authors:  G A Nagana Gowda; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

8.  Application of 31P NMR spectroscopy and chemical derivatization for metabolite profiling of lipophilic compounds in human serum.

Authors:  M Aruni DeSilva; Narasimhamurthy Shanaiah; G A Nagana Gowda; Kellymar Rosa-Pérez; Bryan A Hanson; Daniel Raftery
Journal:  Magn Reson Chem       Date:  2009-12       Impact factor: 2.447

Review 9.  Multidimensional approaches to NMR-based metabolomics.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2013-11-22       Impact factor: 6.986

10.  15N-cholamine--a smart isotope tag for combining NMR- and MS-based metabolite profiling.

Authors:  Fariba Tayyari; G A Nagana Gowda; Haiwei Gu; Daniel Raftery
Journal:  Anal Chem       Date:  2013-08-26       Impact factor: 6.986

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.