Literature DB >> 23076583

Isotope enhanced approaches in metabolomics.

G A Nagana Gowda1, Narasimhamurthy Shanaiah, Daniel Raftery.   

Abstract

The rapidly growing area of "metabolomics," in which a large number of metabolites from body fluids, cells or tissue are detected quantitatively, in a single step, promises immense potential for a number of disciplines including early disease diagnosis, therapy monitoring, systems biology, drug discovery and nutritional science. Because of its ability to detect a large number of metabolites in intact biological samples reproducibly and quantitatively, nuclear magnetic resonance (NMR) spectroscopy has emerged as one of the most powerful analytical techniques in metabolomics. NMR spectroscopy of biological samples with isotope labeling of metabolites using nuclei such as (2)H, (13)C, (15)N and (31)P, either in vivo or ex vivo, has dramatically improved our ability to identify low concentrated metabolites and trace important metabolic pathways. Considering the somewhat limited sensitivity and high complexity of NMR spectra of biological samples, efforts have been made to increase sensitivity and selectivity through isotope labeling methods, which pave novel avenues to unravel biological complexity and understand cellular functions in health and various disease conditions. This chapter describes current developments in isotope labeling of metabolites in vivo as well as ex vivo, and their potential metabolomics applications.

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Year:  2012        PMID: 23076583      PMCID: PMC4754079          DOI: 10.1007/978-94-007-4954-2_8

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  96 in total

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Authors:  Lakshmi Bala; Uday Chand Ghoshal; Ujjala Ghoshal; Pratima Tripathi; Asha Misra; G A Nagana Gowda; C L Khetrapal
Journal:  Magn Reson Med       Date:  2006-10       Impact factor: 4.668

2.  Flux through hepatic pyruvate carboxylase and phosphoenolpyruvate carboxykinase detected by hyperpolarized 13C magnetic resonance.

Authors:  Matthew E Merritt; Crystal Harrison; A Dean Sherry; Craig R Malloy; Shawn C Burgess
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

Review 3.  Global strategies to integrate the proteome and metabolome.

Authors:  Alan Saghatelian; Benjamin F Cravatt
Journal:  Curr Opin Chem Biol       Date:  2005-02       Impact factor: 8.822

4.  Quantitative analysis of blood plasma metabolites using isotope enhanced NMR methods.

Authors:  G A Nagana Gowda; Fariba Tayyari; Tao Ye; Yuliana Suryani; Siwei Wei; Narasimhamurthy Shanaiah; Daniel Raftery
Journal:  Anal Chem       Date:  2010-09-29       Impact factor: 6.986

5.  Two-dimensional DOSY experiment with Excitation Sculpting water suppression for the analysis of natural and biological media.

Authors:  Stéphane Balayssac; Marc-André Delsuc; Véronique Gilard; Yann Prigent; Myriam Malet-Martino
Journal:  J Magn Reson       Date:  2008-09-30       Impact factor: 2.229

6.  Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis.

Authors:  Jason W Locasale; Alexandra R Grassian; Tamar Melman; Costas A Lyssiotis; Katherine R Mattaini; Adam J Bass; Gregory Heffron; Christian M Metallo; Taru Muranen; Hadar Sharfi; Atsuo T Sasaki; Dimitrios Anastasiou; Edouard Mullarky; Natalie I Vokes; Mika Sasaki; Rameen Beroukhim; Gregory Stephanopoulos; Azra H Ligon; Matthew Meyerson; Andrea L Richardson; Lynda Chin; Gerhard Wagner; John M Asara; Joan S Brugge; Lewis C Cantley; Matthew G Vander Heiden
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

7.  NMR indirect detection of glutamate to measure citric acid cycle flux in the isolated perfused mouse heart.

Authors:  S C Burgess; E E Babcock; F M Jeffrey; A D Sherry; C R Malloy
Journal:  FEBS Lett       Date:  2001-09-07       Impact factor: 4.124

8.  Enhancement of the LC/MS analysis of fatty acids through derivatization and stable isotope coding.

Authors:  Wen-Chu Yang; Jiri Adamec; Fred E Regnier
Journal:  Anal Chem       Date:  2007-05-11       Impact factor: 6.986

9.  Improved residual water suppression: WET180.

Authors:  Huaping Mo; Daniel Raftery
Journal:  J Biomol NMR       Date:  2008-05-28       Impact factor: 2.835

10.  Metabolic mapping by use of high-resolution magic angle spinning 1H MR spectroscopy for assessment of apoptosis in cervical carcinomas.

Authors:  Heidi Lyng; Beathe Sitter; Tone F Bathen; Line R Jensen; Kolbein Sundfør; Gunnar B Kristensen; Ingrid S Gribbestad
Journal:  BMC Cancer       Date:  2007-01-17       Impact factor: 4.430

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  4 in total

1.  A fast NMR method for resonance assignments: application to metabolomics.

Authors:  Shivanand M Pudakalakatti; Abhinav Dubey; Garima Jaipuria; U Shubhashree; Satish Kumar Adiga; Detlef Moskau; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2014-02-02       Impact factor: 2.835

Review 2.  Metabolomic-Based Methods in Diagnosis and Monitoring Infection Progression.

Authors:  Miguel Fernández-García; David Rojo; Fernanda Rey-Stolle; Antonia García; Coral Barbas
Journal:  Exp Suppl       Date:  2018

Review 3.  Metabolomic Approaches to Study Chemical Exposure-Related Metabolism Alterations in Mammalian Cell Cultures.

Authors:  Aneta Balcerczyk; Christian Damblon; Bénédicte Elena-Herrmann; Baptiste Panthu; Gilles J P Rautureau
Journal:  Int J Mol Sci       Date:  2020-09-18       Impact factor: 5.923

Review 4.  Quantitative NMR-Based Biomedical Metabolomics: Current Status and Applications.

Authors:  Alexandra A Crook; Robert Powers
Journal:  Molecules       Date:  2020-11-04       Impact factor: 4.927

  4 in total

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