Literature DB >> 168933

The response of oscillating glycolysis to perturbations in the NADH/NAD system: a comparison between experiments and a computer model.

O Richter, A Betz, C Giersch.   

Abstract

The glycolytic pathway is described by a set of coupled non linear differential equations of first order with respect to time. The individual terms of these equations consist of enzyme velocities assuming a steady state hypothesis for the enzymatic forms. These are specified and the system is solved numerically. Oscillations are explained by interaction of PFK with the adenylate system. The conditions for the occurrence of oscillations are tested in a series of computer runs. The phase relations between intermediates of the model agree with those found in yeast cells. As an application of the model the disturbation of oscillations by the addition of acetaldehyde is simulated. The predictions of the model agree with experimental results.

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Year:  1975        PMID: 168933     DOI: 10.1016/0303-2647(75)90051-9

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  8 in total

1.  How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.

Authors:  M Bier; B M Bakker; H V Westerhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Effect of cellular interaction on glycolytic oscillations in yeast: a theoretical investigation.

Authors:  J Wolf; R Heinrich
Journal:  Biochem J       Date:  2000-01-15       Impact factor: 3.857

Review 3.  Towards the engineering of in vitro systems.

Authors:  Christoph Hold; Sven Panke
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

4.  Ferrous-Iron-Activated Transcriptional Factor AdhR Regulates Redox Homeostasis in Clostridium beijerinckii.

Authors:  Bin Yang; Xiaoqun Nie; Youli Xiao; Yang Gu; Weihong Jiang; Chen Yang
Journal:  Appl Environ Microbiol       Date:  2020-03-18       Impact factor: 4.792

5.  Dynamics of glycolytic regulation during adaptation of Saccharomyces cerevisiae to fermentative metabolism.

Authors:  Joost van den Brink; André B Canelas; Walter M van Gulik; Jack T Pronk; Joseph J Heijnen; Johannes H de Winde; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2008-07-18       Impact factor: 4.792

6.  Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics.

Authors:  Karen van Eunen; José A L Kiewiet; Hans V Westerhoff; Barbara M Bakker
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

7.  Extraction of elementary rate constants from global network analysis of E. coli central metabolism.

Authors:  Jiao Zhao; Douglas Ridgway; Gordon Broderick; Andriy Kovalenko; Michael Ellison
Journal:  BMC Syst Biol       Date:  2008-05-07

Review 8.  Kinetic Modeling of Saccharomyces cerevisiae Central Carbon Metabolism: Achievements, Limitations, and Opportunities.

Authors:  David Lao-Martil; Koen J A Verhagen; Joep P J Schmitz; Bas Teusink; S Aljoscha Wahl; Natal A W van Riel
Journal:  Metabolites       Date:  2022-01-13
  8 in total

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