Literature DB >> 19466846

On the applicability of centroid and ring polymer path integral molecular dynamics for vibrational spectroscopy.

Alexander Witt1, Sergei D Ivanov, Motoyuki Shiga, Harald Forbert, Dominik Marx.   

Abstract

Centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD) are two conceptually distinct extensions of path integral molecular dynamics that are able to generate approximate quantum dynamics of complex molecular systems. Both methods can be used to compute quasiclassical time correlation functions which have direct application in molecular spectroscopy; in particular, to infrared spectroscopy via dipole autocorrelation functions. The performance of both methods for computing vibrational spectra of several simple but representative molecular model systems is investigated systematically as a function of temperature and isotopic substitution. In this context both CMD and RPMD feature intrinsic problems which are quantified and investigated in detail. Based on the obtained results guidelines for using CMD and RPMD to compute infrared spectra of molecular systems are provided.

Entities:  

Year:  2009        PMID: 19466846     DOI: 10.1063/1.3125009

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Approximate inclusion of quantum effects in transition path sampling.

Authors:  Dimitri Antoniou; Steven D Schwartz
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

2.  Sum frequency generation, calculation of absolute intensities, comparison with experiments, and two-field relaxation-based derivation.

Authors:  Kai Niu; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-29       Impact factor: 11.205

3.  Proton storage site in bacteriorhodopsin: new insights from quantum mechanics/molecular mechanics simulations of microscopic pK(a) and infrared spectra.

Authors:  Puja Goyal; Nilanjan Ghosh; Prasad Phatak; Maike Clemens; Michael Gaus; Marcus Elstner; Qiang Cui
Journal:  J Am Chem Soc       Date:  2011-09-06       Impact factor: 15.419

4.  Coarse-Graining of Imaginary Time Feynman Path Integrals: Inclusion of Intramolecular Interactions and Bottom-up Force-Matching.

Authors:  Won Hee Ryu; Gregory A Voth
Journal:  J Phys Chem A       Date:  2022-08-25       Impact factor: 2.944

5.  Centroid Molecular Dynamics Can Be Greatly Accelerated through Neural Network Learned Centroid Forces Derived from Path Integral Molecular Dynamics.

Authors:  Timothy D Loose; Patrick G Sahrmann; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-14       Impact factor: 6.578

6.  The strengths and limitations of effective centroid force models explored by studying isotopic effects in liquid water.

Authors:  Ying Yuan; Jicun Li; Xin-Zheng Li; Feng Wang
Journal:  J Chem Phys       Date:  2018-05-14       Impact factor: 3.488

7.  Molecular Structure and Modeling of Water-Air and Ice-Air Interfaces Monitored by Sum-Frequency Generation.

Authors:  Fujie Tang; Tatsuhiko Ohto; Shumei Sun; Jérémy R Rouxel; Sho Imoto; Ellen H G Backus; Shaul Mukamel; Mischa Bonn; Yuki Nagata
Journal:  Chem Rev       Date:  2020-03-06       Impact factor: 60.622

8.  A generalized class of strongly stable and dimension-free T-RPMD integrators.

Authors:  Jorge L Rosa-Raíces; Jiace Sun; Nawaf Bou-Rabee; Thomas F Miller
Journal:  J Chem Phys       Date:  2021-01-14       Impact factor: 3.488

9.  Path Integral Molecular Dynamics of Liquid Water in a Mean-Field Particle Reservoir.

Authors:  Antonios Evangelakis; Sara Panahian Jand; Luigi Delle Site
Journal:  ChemistryOpen       Date:  2022-02-25       Impact factor: 2.630

10.  Thermally Induced Hydrogen-Bond Rearrangements in Small Water Clusters and the Persistent Water Tetramer.

Authors:  Nagaprasad Reddy Samala; Noam Agmon
Journal:  ACS Omega       Date:  2019-12-17
  10 in total

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